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LOC100279784 uncharacterized LOC100279784 [ Zea mays ]

Gene ID: 100279784, updated on 18-Aug-2023

Summary

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Gene symbol
LOC100279784
Gene description
uncharacterized LOC100279784
Locus tag
ZEAMMB73_Zm00001d017420
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
THX20; si614035g09a; GRMZM2G169580
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Genomic context

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See LOC100279784 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (194372335..194376401, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (195391880..195395949, complement)

Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100280692 Neighboring gene protein kinase APK1A Neighboring gene uncharacterized LOC118472088 Neighboring gene uncharacterized LOC109939586

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized LOC100279784; uncharacterized protein LOC100279784
Names
GT-2-like 1
putative homeodomain-like transcription factor superfamily protein
si614035g09(438)
trihelix transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001152742.1 → NP_001146214.1  uncharacterized LOC100279784

    See identical proteins and their annotated locations for NP_001146214.1

    Status: PROVISIONAL

    Source sequence(s)
    BT067767
    UniProtKB/TrEMBL
    A0A3L6EIJ7, B7ZZY0
    Conserved Domains (2) summary
    cd12203
    Location:99 → 164
    GT1; myb-like, SANT family
    pfam13837
    Location:413 → 499
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    194372335..194376401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008645259.4 → XP_008643481.1  uncharacterized protein LOC100279784 isoform X1

    See identical proteins and their annotated locations for XP_008643481.1

    UniProtKB/TrEMBL
    A0A3L6EIJ7, B7ZZY0
    Conserved Domains (2) summary
    cd12203
    Location:99 → 164
    GT1; myb-like, SANT family
    pfam13837
    Location:413 → 499
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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