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LOC100274089 uncharacterized LOC100274089 [ Zea mays ]

Gene ID: 100274089, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100274089
Gene description
uncharacterized LOC100274089
Locus tag
ZEAMMB73_Zm00001d028936
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
bZIP52; GRMZM2G174284
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (51626334..51632231, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (52167776..52173560, complement)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene galactinol synthase 1 Neighboring gene pentatricopeptide repeat-containing protein At1g56690, mitochondrial Neighboring gene uncharacterized LOC103634584 Neighboring gene uncharacterized LOC118473625 Neighboring gene transfer RNA alanine (anticodon CGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
  2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Transcription factor TGA2.2; uncharacterized protein LOC100274089
Names
Transcription factor TGA6
bZIP transcription factor
putative bZIP transcription factor superfamily protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001148468.1 → NP_001141940.1  Transcription factor TGA2.2

    See identical proteins and their annotated locations for NP_001141940.1

    Status: PROVISIONAL

    Source sequence(s)
    BT066852
    UniProtKB/TrEMBL
    A0A1D6K110, C0PEY3
    Conserved Domains (3) summary
    cd14686
    Location:52 → 103
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:133 → 209
    DOG1; Seed dormancy control
    cl21462
    Location:51 → 103
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    51626334..51632231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008669981.3 → XP_008668203.1  uncharacterized protein LOC100274089 isoform X1

    See identical proteins and their annotated locations for XP_008668203.1

    UniProtKB/TrEMBL
    A0A1D6K110, C0PEY3
    Conserved Domains (3) summary
    cd14686
    Location:52 → 103
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:133 → 209
    DOG1; Seed dormancy control
    cl21462
    Location:51 → 103
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_008669973.3 → XP_008668195.1  uncharacterized protein LOC100274089 isoform X1

    See identical proteins and their annotated locations for XP_008668195.1

    UniProtKB/TrEMBL
    A0A1D6K110, C0PEY3
    Conserved Domains (3) summary
    cd14686
    Location:52 → 103
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:133 → 209
    DOG1; Seed dormancy control
    cl21462
    Location:51 → 103
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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