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LOC100265540 NAC domain-containing protein 40 [ Vitis vinifera (wine grape) ]

Gene ID: 100265540, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100265540
Gene description
NAC domain-containing protein 40
Locus tag
VIT_00036071001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
Also known as
GO:0003677 GO:0045449
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Genomic context

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See LOC100265540 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (24054537..24059713)
102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (21041015..21046266)

Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene bifunctional nitrilase/nitrile hydratase NIT4B Neighboring gene bifunctional nitrilase/nitrile hydratase NIT4A-like Neighboring gene uncharacterized LOC109121796 Neighboring gene secreted RxLR effector protein 161-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAC domain-containing protein 40
Names
NAC domain-containing protein 18-like
NAC domain-containing protein 89

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

    Range
    24054537..24059713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010653560.3 → XP_010651862.1  NAC domain-containing protein 40 isoform X2

    Conserved Domains (1) summary
    pfam02365
    Location:33 → 74
    NAM; No apical meristem (NAM) protein

  2. XM_002272878.4 → XP_002272914.2  NAC domain-containing protein 40 isoform X1

    UniProtKB/TrEMBL
    A5BXG9, F6HHD1
    Conserved Domains (1) summary
    pfam02365
    Location:33 → 74
    NAM; No apical meristem (NAM) protein
Nucleotide Protein
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