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LOC100263099 uncharacterized LOC100263099 [ Vitis vinifera (wine grape) ]

Gene ID: 100263099, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100263099
Gene description
uncharacterized LOC100263099
Locus tag
VIT_00001371001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100263099 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 13 NC_081817.1 (29402931..29405969, complement)
102 previous assembly 12X (GCF_000003745.3) 13 NC_012019.3 (24064421..24067499)

Chromosome 13 - NC_081817.1Genomic Context describing neighboring genes Neighboring gene protein EMSY-LIKE 3 Neighboring gene zeaxanthin epoxidase, chloroplastic Neighboring gene hypothetical protein Neighboring gene zinc finger CCCH domain-containing protein 14-like Neighboring gene protein N-terminal asparagine amidohydrolase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. Velasco R, et al. PLoS One, 2007 Dec 19. PMID 18094749, Free PMC Article
  2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100263099

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081817.1 Reference ASM3070453v1 Primary Assembly

    Range
    29402931..29405969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002268292.4 → XP_002268328.1  uncharacterized protein LOC100263099

    See identical proteins and their annotated locations for XP_002268328.1

    UniProtKB/TrEMBL
    A0A438IAB1, A5AP96
    Conserved Domains (3) summary
    smart00297
    Location:327 → 435
    BROMO; bromo domain
    smart00717
    Location:30 → 85
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:31 → 83
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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