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LOC100260828 calmodulin-binding transcription activator 4 [ Vitis vinifera (wine grape) ]

Gene ID: 100260828, updated on 6-Jun-2024

Summary

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Gene symbol
LOC100260828
Gene description
calmodulin-binding transcription activator 4
Locus tag
VIT_00010506001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (25930217..25945034, complement)
102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (21200705..21215517, complement)

Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene LRR receptor-like serine/threonine-protein kinase GSO1 Neighboring gene uncharacterized LOC100257379 Neighboring gene uncharacterized LOC100243721 Neighboring gene uncharacterized LOC104880621 Neighboring gene flowering locus C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmodulin-binding transcription activator 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

    Range
    25930217..25945034 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002270829.5 → XP_002270865.2  calmodulin-binding transcription activator 4 isoform X6

    UniProtKB/TrEMBL
    A0A438DX40
    Conserved Domains (7) summary
    smart00015
    Location:849 → 870
    IQ; Calmodulin-binding motif
    cd00204
    Location:629 → 716
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:426 → 509
    TIG; IPT/TIG domain
    pfam03859
    Location:12 → 126
    CG-1; CG-1 domain
    pfam12796
    Location:629 → 682
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:658 → 716
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:657 → 694
    ANK; ANK repeat [structural motif]

  2. XM_010657741.3 → XP_010656043.1  calmodulin-binding transcription activator 4 isoform X5

    UniProtKB/TrEMBL
    A0A438DX40
    Conserved Domains (7) summary
    smart00015
    Location:849 → 870
    IQ; Calmodulin-binding motif
    cd00204
    Location:629 → 716
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:426 → 509
    TIG; IPT/TIG domain
    pfam03859
    Location:12 → 126
    CG-1; CG-1 domain
    pfam12796
    Location:629 → 682
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:658 → 716
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:657 → 694
    ANK; ANK repeat [structural motif]

  3. XM_059735710.1 → XP_059591693.1  calmodulin-binding transcription activator 4 isoform X7

    UniProtKB/TrEMBL
    A0A438DX40, D7TB03

  4. XM_059735694.1 → XP_059591677.1  calmodulin-binding transcription activator 4 isoform X2

    UniProtKB/TrEMBL
    A0A438DX40

  5. XM_059735691.1 → XP_059591674.1  calmodulin-binding transcription activator 4 isoform X1

    UniProtKB/TrEMBL
    A0A438DX40

  6. XM_059735697.1 → XP_059591680.1  calmodulin-binding transcription activator 4 isoform X3

    UniProtKB/TrEMBL
    A0A438DX40

  7. XM_059735701.1 → XP_059591684.1  calmodulin-binding transcription activator 4 isoform X3

    UniProtKB/TrEMBL
    A0A438DX40

  8. XM_059735702.1 → XP_059591685.1  calmodulin-binding transcription activator 4 isoform X3

    UniProtKB/TrEMBL
    A0A438DX40

  9. XM_059735704.1 → XP_059591687.1  calmodulin-binding transcription activator 4 isoform X4

    UniProtKB/TrEMBL
    A0A438DX40
Nucleotide Protein
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