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LOC100251621 transcription factor ILR3 [ Vitis vinifera (wine grape) ]

Gene ID: 100251621, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100251621
Gene description
transcription factor ILR3
Locus tag
VIT_00030640001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
Also known as
GO:0030528 GO:0003677 GO:0005634 GO:0045449
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Genomic context

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See LOC100251621 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 12 NC_081816.1 (7396198..7399559, complement)
102 previous assembly 12X (GCF_000003745.3) 12 NC_012018.3 (7357731..7361089, complement)

Chromosome 12 - NC_081816.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat-containing protein BDA1 Neighboring gene uclacyanin 1 Neighboring gene uncharacterized LOC100256871 Neighboring gene uncharacterized LOC109123560 Neighboring gene beta-amylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ILR3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081816.1 Reference ASM3070453v1 Primary Assembly

    Range
    7396198..7399559 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002274793.5 → XP_002274829.2  transcription factor ILR3

    UniProtKB/TrEMBL
    A0A438FEY0, F6HIM0
    Conserved Domains (2) summary
    cd11446
    Location:84 → 159
    bHLH_AtILR3_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein IAA-leucine resistant 3 (ILR3) and similar proteins
    cl28929
    Location:114 → 231
    VirB10_like; VirB10 and similar proteins form part of core complex in Type IV secretion system (T4SS)
Nucleotide Protein
Heading Accession and Version

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