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LOC100249427 NAC domain-containing protein 17 [ Vitis vinifera (wine grape) ]

Gene ID: 100249427, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100249427
Gene description
NAC domain-containing protein 17
Locus tag
VIT_00013671001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100249427 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (22350878..22356425, complement)
102 previous assembly 12X (GCF_000003745.3) 18 Unlocalized Scaffold NW_003724189.1 (425996..431626, complement)

Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene shikimate kinase 3, chloroplastic Neighboring gene cleavage stimulating factor 64 Neighboring gene very-long-chain aldehyde decarbonylase GL1-9 Neighboring gene pentatricopeptide repeat-containing protein At1g34160

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAC domain-containing protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

    Range
    22350878..22356425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002265575.5 → XP_002265611.1  NAC domain-containing protein 17

    See identical proteins and their annotated locations for XP_002265611.1

    UniProtKB/TrEMBL
    A0A438CHN0, D7TFR5
    Conserved Domains (1) summary
    pfam02365
    Location:23 → 64
    NAM; No apical meristem (NAM) protein
Nucleotide Protein
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