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LOC100248677 protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [ Vitis vinifera (wine grape) ]

Gene ID: 100248677, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100248677
Gene description
protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Locus tag
VIT_00034505001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100248677 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (24556788..24559749, complement)
102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (20208089..20211048, complement)

Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene F-box protein SKIP2 Neighboring gene FHA domain-containing protein PS1 Neighboring gene tetratricopeptide repeat domain-containing protein PYG7, chloroplastic Neighboring gene uncharacterized LOC132253207 Neighboring gene exosome complex component RRP45A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to acidic pH IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to aluminum ion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SENSITIVE TO PROTON RHIZOTOXICITY 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

    Range
    24556788..24559749 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019216722.2 → XP_019072267.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1

    UniProtKB/TrEMBL
    A0A438EMM9, A5BSF5

  2. XM_059734462.1 → XP_059590445.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1

    UniProtKB/TrEMBL
    A5BSF5

  3. XM_019216721.2 → XP_019072266.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1

    UniProtKB/TrEMBL
    A0A438EMM9, A5BSF5
Nucleotide Protein
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