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LOC100216850 uncharacterized LOC100216850 [ Zea mays ]

Gene ID: 100216850, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100216850
Gene description
uncharacterized LOC100216850
Locus tag
ZEAMMB73_Zm00001d029963
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
MYBR32; GRMZM2G088524
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Genomic context

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See LOC100216850 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (95697382..95699359)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (96573438..96575415)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene long chain base biosynthesis protein 2a-like Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene uncharacterized LOC118476027 Neighboring gene uncharacterized LOC100285733 Neighboring gene transfer RNA serine (anticodon GCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to auxin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to gibberellin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Transcription factor MYBS2
Names
MYB-related transcription factor
mcb1 protein
myb-like transcription factor family protein
putative MYB DNA-binding domain superfamily protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001143242.1 → NP_001136714.1  Transcription factor MYBS2

    See identical proteins and their annotated locations for NP_001136714.1

    Status: PROVISIONAL

    Source sequence(s)
    BT037447
    UniProtKB/TrEMBL
    B4FK09, B6T8B0
    Conserved Domains (1) summary
    TIGR01557
    Location:94 → 146
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    95697382..95699359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
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