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abca5 ATP binding cassette subfamily A member 5 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100216156, updated on 4-Nov-2024

Summary

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Official Symbol
abca5provided by Xenbase
Official Full Name
ATP binding cassette subfamily A member 5provided by Xenbase
Primary source
Xenbase:XB-GENE-1012902
See related
Ensembl:ENSXETG00000031795 AllianceGenome:Xenbase:XB-GENE-1012902
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Orthologous to human ABCA5 (ATP binding cassette subfamily A member 5). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See abca5 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
40
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (31509280..31584067, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (23384034..23458428, complement)

Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily A member 10 Neighboring gene ATP binding cassette subfamily A member 8 Neighboring gene uncharacterized LOC116407967 Neighboring gene BTB (POZ) domain containing 17 Neighboring gene G protein-coupled receptor 142

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP-binding cassette sub-family A member 5
Names
ATP-binding cassette, sub-family A (ABC1), member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142127.1 → NP_001135599.1  ATP-binding cassette sub-family A member 5

    See identical proteins and their annotated locations for NP_001135599.1

    Status: PROVISIONAL

    Source sequence(s)
    BC168134
    UniProtKB/TrEMBL
    A0A6I8PMT6, A0A6I8RS13, B4F751
    Related
    ENSXETP00000060085.3, ENSXETT00000063822.3
    Conserved Domains (1) summary
    TIGR01257
    Location:87 → 1616
    rim_protein; retinal-specific rim ABC transporter

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    31509280..31584067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031894000.1 → XP_031749860.1  ATP-binding cassette sub-family A member 5 isoform X1

    UniProtKB/TrEMBL
    A0A6I8PMT6, A0A6I8RS13, B4F751
    Conserved Domains (1) summary
    TIGR01257
    Location:87 → 1616
    rim_protein; retinal-specific rim ABC transporter

  2. XM_012966224.3 → XP_012821678.2  ATP-binding cassette sub-family A member 5 isoform X1

    UniProtKB/TrEMBL
    A0A6I8PMT6, A0A6I8RS13, B4F751
    Conserved Domains (1) summary
    TIGR01257
    Location:87 → 1616
    rim_protein; retinal-specific rim ABC transporter

  3. XM_031894001.1 → XP_031749861.1  ATP-binding cassette sub-family A member 5 isoform X1

    UniProtKB/TrEMBL
    A0A6I8PMT6, A0A6I8RS13, B4F751
    Conserved Domains (1) summary
    TIGR01257
    Location:87 → 1616
    rim_protein; retinal-specific rim ABC transporter
Nucleotide Protein Strain
Heading Accession and Version

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