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ssbp2 single-stranded DNA binding protein 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100216109, updated on 4-Nov-2024

Summary

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Official Symbol
ssbp2provided by Xenbase
Official Full Name
single-stranded DNA binding protein 2provided by Xenbase
Primary source
Xenbase:XB-GENE-987286
See related
Ensembl:ENSXETG00000027809 AllianceGenome:Xenbase:XB-GENE-987286
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
soss-b2; xlssbp2
Summary
Predicted to enable single-stranded DNA binding activity. Predicted to be located in nucleus. Orthologous to human SSBP2 (single stranded DNA binding protein 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ssbp2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (181742982..181845430)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (167928245..168029977, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene autophagy related 10 Neighboring gene uncharacterized LOC116408335 Neighboring gene acyl-CoA thioesterase 12 Neighboring gene zinc finger CCHC-type containing 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
single-stranded DNA-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142090.1 → NP_001135562.1  single-stranded DNA-binding protein 2

    See identical proteins and their annotated locations for NP_001135562.1

    Status: PROVISIONAL

    Source sequence(s)
    BC168053
    UniProtKB/TrEMBL
    A0A803KGZ7, B4F6X9, F7CLE9
    Related
    ENSXETP00000049621.5, ENSXETT00000049621.5
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 364
    SSDP; Single-stranded DNA binding protein, SSDP

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    181742982..181845430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031896282.1 → XP_031752142.1  single-stranded DNA-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8J1J2S2, B4F6X9, F7CLE9
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 372
    SSDP; Single-stranded DNA binding protein, SSDP

  2. XM_018091358.2 → XP_017946847.1  single-stranded DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J0T1K7, B4F6X9, F7CLE9

  3. XM_018091362.2 → XP_017946851.1  single-stranded DNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8J0T0U8, B4F6X9, F7CLE9

  4. XM_012957446.3 → XP_012812900.1  single-stranded DNA-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8J0SFB5, B4F6X9, F7CLE9
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 336
    SSDP; Single-stranded DNA binding protein, SSDP
Nucleotide Protein Strain
Heading Accession and Version

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