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tal1 T-cell acute lymphocytic leukemia 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100196924, updated on 17-Aug-2024

Summary

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Official Symbol
tal1provided by Xenbase
Official Full Name
T-cell acute lymphocytic leukemia 1provided by Xenbase
Primary source
Xenbase:XB-GENE-479827
See related
Ensembl:ENSXETG00000041260
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
SCL; tcl5; xscl; tal-1; bHLHa17
Orthologs
human mouse all
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Genomic context

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See tal1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (93938820..93950771, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (83733276..83745206, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family 4 subfamily B member 1 gene 6 Neighboring gene pdzk1 interacting protein 1 Neighboring gene STIL, centriolar assembly protein Neighboring gene cytidine monophosphate (UMP-CMP) kinase 1, cytosolic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
T-cell acute lymphocytic leukemia protein 1
Names
stem cell leukaemia

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001141996.1 → NP_001135468.1  T-cell acute lymphocytic leukemia protein 1

    See identical proteins and their annotated locations for NP_001135468.1

    Status: PROVISIONAL

    Source sequence(s)
    BC168586
    UniProtKB/TrEMBL
    A0A6I8S4J1, B5DEA1
    Related
    ENSXETP00000088149.1, ENSXETT00000100156.2
    Conserved Domains (2) summary
    PHA03247
    Location:6 → 195
    PHA03247; large tegument protein UL36; Provisional
    cd19706
    Location:254 → 318
    bHLH_TS_TAL1; basic helix-loop-helix (bHLH) domain found in T-cell acute lymphocytic leukemia protein 1 (TAL-1) and similar proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    93938820..93950771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018092943.2 → XP_017948432.1  T-cell acute lymphocytic leukemia protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J0T2E3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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