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trdn triadin [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145422, updated on 17-Aug-2024

Summary

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Official Symbol
trdnprovided by Xenbase
Official Full Name
triadinprovided by Xenbase
Primary source
Xenbase:XB-GENE-6459211
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
tdn; trisk; trisk51
Orthologs
human mouse all
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Genomic context

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See trdn in Genome Data Viewer
Location:
chromosome: 5
Exon count:
63
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (65994654..66239794, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (47462840..47712214, complement)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene clavesin 2 Neighboring gene uncharacterized LOC101734009 Neighboring gene Sodium/potassium transporting ATPase interacting 2 Neighboring gene ring finger protein 217

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in sarcoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in sarcoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
triadin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    65994654..66239794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031902115.1 → XP_031757975.1  triadin isoform X49

    UniProtKB/TrEMBL
    A0A8J1JJC7
    Conserved Domains (1) summary
    PTZ00121
    Location:816 → 1385
    PTZ00121; MAEBL; Provisional

  2. XM_031902106.1 → XP_031757966.1  triadin isoform X40

    UniProtKB/TrEMBL
    A0A8J1JMY6
    Conserved Domains (1) summary
    PTZ00121
    Location:816 → 1387
    PTZ00121; MAEBL; Provisional

  3. XM_031902107.1 → XP_031757967.1  triadin isoform X41

    UniProtKB/TrEMBL
    A0A8J1JJB8
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1408
    PTZ00121; MAEBL; Provisional

  4. XM_031902105.1 → XP_031757965.1  triadin isoform X39

    UniProtKB/TrEMBL
    A0A8J1JLR5
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1408
    PTZ00121; MAEBL; Provisional

  5. XM_031902113.1 → XP_031757973.1  triadin isoform X47

    UniProtKB/TrEMBL
    A0A8J1JJC7
    Conserved Domains (1) summary
    PTZ00121
    Location:816 → 1385
    PTZ00121; MAEBL; Provisional

  6. XM_031902103.1 → XP_031757963.1  triadin isoform X37

    UniProtKB/TrEMBL
    A0A8J1JJB6
    Conserved Domains (1) summary
    PTZ00121
    Location:822 → 1408
    PTZ00121; MAEBL; Provisional

  7. XM_031902114.1 → XP_031757974.1  triadin isoform X48

    UniProtKB/TrEMBL
    A0A8J1JJC6
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1392
    PTZ00121; MAEBL; Provisional

  8. XM_031902104.1 → XP_031757964.1  triadin isoform X38

    UniProtKB/TrEMBL
    A0A8J1JJB7
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1408
    PTZ00121; MAEBL; Provisional

  9. XM_031902112.1 → XP_031757972.1  triadin isoform X46

    UniProtKB/TrEMBL
    A0A8J1JJC2
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1388
    PTZ00121; MAEBL; Provisional

  10. XM_031902075.1 → XP_031757935.1  triadin isoform X10

    UniProtKB/TrEMBL
    A0A8J1JLN8
    Conserved Domains (1) summary
    PTZ00121
    Location:816 → 1424
    PTZ00121; MAEBL; Provisional

  11. XM_031902101.1 → XP_031757961.1  triadin isoform X35

    UniProtKB/TrEMBL
    A0A8J1JMX8
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1387
    PTZ00121; MAEBL; Provisional

  12. XM_031902078.1 → XP_031757938.1  triadin isoform X13

    UniProtKB/TrEMBL
    A0A8J1JJ91
    Conserved Domains (1) summary
    PTZ00121
    Location:816 → 1417
    PTZ00121; MAEBL; Provisional

  13. XM_031902080.1 → XP_031757940.1  triadin isoform X15

    UniProtKB/TrEMBL
    A0A8J1JLP3
    Conserved Domains (1) summary
    PTZ00121
    Location:816 → 1417
    PTZ00121; MAEBL; Provisional

  14. XM_031902084.1 → XP_031757944.1  triadin isoform X18

    UniProtKB/TrEMBL
    A0A8J1JJ98
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1403
    PTZ00121; MAEBL; Provisional

  15. XM_031902087.1 → XP_031757947.1  triadin isoform X21

    UniProtKB/TrEMBL
    A0A8J1JJ98
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1403
    PTZ00121; MAEBL; Provisional

  16. XM_031902074.1 → XP_031757934.1  triadin isoform X9

    UniProtKB/TrEMBL
    A0A8J1JJ88
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1403
    PTZ00121; MAEBL; Provisional

  17. XM_031902102.1 → XP_031757962.1  triadin isoform X36

    UniProtKB/TrEMBL
    A0A8J1JJB2
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1408
    PTZ00121; MAEBL; Provisional

  18. XM_031902077.1 → XP_031757937.1  triadin isoform X12

    UniProtKB/TrEMBL
    A0A8J1JJ87
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1403
    PTZ00121; MAEBL; Provisional

  19. XM_031902081.1 → XP_031757941.1  triadin isoform X16

    UniProtKB/TrEMBL
    A0A8J1JMW0
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1424
    PTZ00121; MAEBL; Provisional

  20. XM_031902085.1 → XP_031757945.1  triadin isoform X19

    UniProtKB/TrEMBL
    A0A8J1JLP8
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1424
    PTZ00121; MAEBL; Provisional

  21. XM_031902088.1 → XP_031757948.1  triadin isoform X22

    UniProtKB/TrEMBL
    A0A8J1JLP8
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1424
    PTZ00121; MAEBL; Provisional

  22. XM_031902073.1 → XP_031757933.1  triadin isoform X8

    UniProtKB/TrEMBL
    A0A8J1JJ86
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1417
    PTZ00121; MAEBL; Provisional

  23. XM_031902100.1 → XP_031757960.1  triadin isoform X34

    UniProtKB/TrEMBL
    A0A8J1JLR0
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1408
    PTZ00121; MAEBL; Provisional

  24. XM_031902076.1 → XP_031757936.1  triadin isoform X11

    UniProtKB/TrEMBL
    A0A8J1JMV5
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1417
    PTZ00121; MAEBL; Provisional

  25. XM_031902079.1 → XP_031757939.1  triadin isoform X14

    UniProtKB/TrEMBL
    A0A8J1JJ93
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1424
    PTZ00121; MAEBL; Provisional

  26. XM_031902082.1 → XP_031757942.1  triadin isoform X17

    UniProtKB/TrEMBL
    A0A8J1JJ92
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1424
    PTZ00121; MAEBL; Provisional

  27. XM_031902086.1 → XP_031757946.1  triadin isoform X20

    UniProtKB/TrEMBL
    A0A8J1JJ92
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1424
    PTZ00121; MAEBL; Provisional

  28. XM_031902110.1 → XP_031757970.1  triadin isoform X44

    UniProtKB/TrEMBL
    A0A8J1JLS0
    Conserved Domains (1) summary
    PTZ00121
    Location:814 → 1385
    PTZ00121; MAEBL; Provisional

  29. XM_031902111.1 → XP_031757971.1  triadin isoform X45

    UniProtKB/TrEMBL
    A0A8J1JLS0
    Conserved Domains (1) summary
    PTZ00121
    Location:814 → 1385
    PTZ00121; MAEBL; Provisional

  30. XM_031902099.1 → XP_031757959.1  triadin isoform X33

    UniProtKB/TrEMBL
    A0A8J1JJA6
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1408
    PTZ00121; MAEBL; Provisional

  31. XM_031902071.1 → XP_031757931.1  triadin isoform X6

    UniProtKB/TrEMBL
    A0A8J1JJ82
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1417
    PTZ00121; MAEBL; Provisional

  32. XM_031902072.1 → XP_031757932.1  triadin isoform X7

    UniProtKB/TrEMBL
    A0A8J1JJ82
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1417
    PTZ00121; MAEBL; Provisional

  33. XM_031902098.1 → XP_031757958.1  triadin isoform X32

    UniProtKB/TrEMBL
    A0A8J1JJA6
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1408
    PTZ00121; MAEBL; Provisional

  34. XM_031902097.1 → XP_031757957.1  triadin isoform X31

    UniProtKB/TrEMBL
    A0A8J1JJA6
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1408
    PTZ00121; MAEBL; Provisional

  35. XM_031902091.1 → XP_031757951.1  triadin isoform X25

    UniProtKB/TrEMBL
    A0A8J1JMX0
    Conserved Domains (1) summary
    PTZ00121
    Location:897 → 1422
    PTZ00121; MAEBL; Provisional

  36. XM_031902092.1 → XP_031757952.1  triadin isoform X26

    UniProtKB/TrEMBL
    A0A8J1JJA1
    Conserved Domains (1) summary
    PTZ00121
    Location:897 → 1422
    PTZ00121; MAEBL; Provisional

  37. XM_031902108.1 → XP_031757968.1  triadin isoform X42

    UniProtKB/TrEMBL
    A0A8J1JJC3
    Conserved Domains (1) summary
    PTZ00121
    Location:881 → 1406
    PTZ00121; MAEBL; Provisional

  38. XM_031902090.1 → XP_031757950.1  triadin isoform X24

    UniProtKB/TrEMBL
    A0A8J1JLQ3
    Conserved Domains (1) summary
    PTZ00121
    Location:898 → 1423
    PTZ00121; MAEBL; Provisional

  39. XM_031902089.1 → XP_031757949.1  triadin isoform X23

    UniProtKB/TrEMBL
    A0A8J1JJA3
    Conserved Domains (1) summary
    PTZ00121
    Location:898 → 1423
    PTZ00121; MAEBL; Provisional

  40. XM_031902096.1 → XP_031757956.1  triadin isoform X30

    UniProtKB/TrEMBL
    A0A8J1JLQ5
    Conserved Domains (1) summary
    PTZ00121
    Location:915 → 1387
    PTZ00121; MAEBL; Provisional

  41. XM_031902068.1 → XP_031757928.1  triadin isoform X3

    UniProtKB/TrEMBL
    A0A8J1JJ81
    Conserved Domains (1) summary
    PTZ00121
    Location:816 → 1417
    PTZ00121; MAEBL; Provisional

  42. XM_031902070.1 → XP_031757930.1  triadin isoform X5

    UniProtKB/TrEMBL
    A0A8J1JLN3
    Conserved Domains (1) summary
    PTZ00121
    Location:816 → 1417
    PTZ00121; MAEBL; Provisional

  43. XM_031902069.1 → XP_031757929.1  triadin isoform X4

    UniProtKB/TrEMBL
    A0A8J1JJ83
    Conserved Domains (1) summary
    PTZ00121
    Location:874 → 1417
    PTZ00121; MAEBL; Provisional

  44. XM_031902066.1 → XP_031757926.1  triadin isoform X1

    UniProtKB/TrEMBL
    A0A8J1JMU5
    Conserved Domains (1) summary
    PTZ00121
    Location:915 → 1440
    PTZ00121; MAEBL; Provisional

  45. XM_031902067.1 → XP_031757927.1  triadin isoform X2

    UniProtKB/TrEMBL
    A0A8J1JJ77
    Conserved Domains (1) summary
    PTZ00121
    Location:865 → 1440
    PTZ00121; MAEBL; Provisional

  46. XM_031902116.1 → XP_031757976.1  triadin isoform X50

    UniProtKB/TrEMBL
    A0A8J1JMZ2
    Conserved Domains (1) summary
    PTZ00121
    Location:863 → 1388
    PTZ00121; MAEBL; Provisional

  47. XM_031902094.1 → XP_031757954.1  triadin isoform X28

    UniProtKB/TrEMBL
    A0A8J1JJA8
    Conserved Domains (1) summary
    PTZ00121
    Location:883 → 1408
    PTZ00121; MAEBL; Provisional

  48. XM_031902109.1 → XP_031757969.1  triadin isoform X43

    UniProtKB/TrEMBL
    A0A8J1JJC1
    Conserved Domains (1) summary
    PTZ00121
    Location:856 → 1402
    PTZ00121; MAEBL; Provisional

  49. XM_031902093.1 → XP_031757953.1  triadin isoform X27

    UniProtKB/TrEMBL
    A0A8J1JJA7
    Conserved Domains (1) summary
    PTZ00121
    Location:895 → 1420
    PTZ00121; MAEBL; Provisional

  50. XM_031902095.1 → XP_031757955.1  triadin isoform X29

    UniProtKB/TrEMBL
    A0A8J1JLQ5
    Conserved Domains (1) summary
    PTZ00121
    Location:915 → 1387
    PTZ00121; MAEBL; Provisional
Nucleotide Protein Strain
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