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nab1 NGFI-A binding protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145272, updated on 17-Aug-2024

Summary

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Official Symbol
nab1provided by Xenbase
Official Full Name
NGFI-A binding protein 1provided by Xenbase
Primary source
Xenbase:XB-GENE-1013984
See related
Ensembl:ENSXETG00000049172
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See nab1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (45354198..45445014)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (29801469..29892328, complement)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene inositol polyphosphate-1-phosphatase Neighboring gene major facilitator superfamily domain containing 6 Neighboring gene glutaminase Neighboring gene uncharacterized LOC116407613 Neighboring gene TBCC domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NGFI-A-binding protein 1
Names
NGFI-A binding protein 1 (EGR1 binding protein 1)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126751.1 → NP_001120223.1  NGFI-A-binding protein 1

    See identical proteins and their annotated locations for NP_001120223.1

    Status: PROVISIONAL

    Source sequence(s)
    BC160386
    UniProtKB/TrEMBL
    A0A803KG72, B1H0X5
    Related
    ENSXETP00000119434.1, ENSXETT00000105672.1
    Conserved Domains (3) summary
    pfam04902
    Location:320 → 454
    Nab1; Conserved region in Nab1
    pfam04904
    Location:6 → 83
    NCD1; NAB conserved region 1 (NCD1)
    pfam04905
    Location:170 → 314
    NCD2; NAB conserved region 2 (NCD2)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    45354198..45445014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012968009.3 → XP_012823463.1  NGFI-A-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A803J6S7, A0A803KG72
    Related
    ENSXETP00000103509.1, ENSXETT00000111021.1
    Conserved Domains (3) summary
    pfam04905
    Location:186 → 313
    NCD2; NAB conserved region 2 (NCD2)
    pfam04902
    Location:319 → 414
    Nab1; Conserved region in Nab1
    pfam04904
    Location:6 → 83
    NCD1; NAB conserved region 1 (NCD1)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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