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erc1 ELKS/RAB6-interacting/CAST family member 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145199, updated on 4-Nov-2024

Summary

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Official Symbol
erc1provided by Xenbase
Official Full Name
ELKS/RAB6-interacting/CAST family member 1provided by Xenbase
Primary source
Xenbase:XB-GENE-956039
See related
Ensembl:ENSXETG00000009409 AllianceGenome:Xenbase:XB-GENE-956039
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to be located in several cellular components, including cytoplasm; cytoskeleton; and presynapse. Orthologous to human ERC1 (ELKS/RAB6-interacting/CAST family member 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See erc1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
23
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (9471659..9641357, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683430.1 (125787..284579, complement)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101731549 Neighboring gene Wnt family member 5B Neighboring gene F-box and leucine-rich repeat protein 14 Neighboring gene RAD52 homolog, DNA repair protein Neighboring gene WNK lysine deficient protein kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in presynapse IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ELKS/Rab6-interacting/CAST family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126688.1 → NP_001120160.1  ELKS/Rab6-interacting/CAST family member 1

    See identical proteins and their annotated locations for NP_001120160.1

    Status: PROVISIONAL

    Source sequence(s)
    BC159161
    UniProtKB/TrEMBL
    A0A6I8QP66, B0JZF9
    Conserved Domains (2) summary
    pfam09457
    Location:1077 → 1117
    RBD-FIP; FIP domain
    pfam10174
    Location:155 → 990
    Cast; RIM-binding protein of the cytomatrix active zone

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    9471659..9641357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031897623.1 → XP_031753483.1  ELKS/Rab6-interacting/CAST family member 1 isoform X6

    UniProtKB/TrEMBL
    A0A6I8S4C4, A0A8J1J6J3
    Conserved Domains (2) summary
    pfam09457
    Location:1044 → 1084
    RBD-FIP; FIP domain
    pfam10174
    Location:155 → 957
    Cast; RIM-binding protein of the cytomatrix active zone

  2. XM_031897621.1 → XP_031753481.1  ELKS/Rab6-interacting/CAST family member 1 isoform X4

    UniProtKB/TrEMBL
    A0A6I8S4C4, A0A8J1J9Z9
    Conserved Domains (2) summary
    pfam09457
    Location:1057 → 1097
    RBD-FIP; FIP domain
    pfam10174
    Location:155 → 970
    Cast; RIM-binding protein of the cytomatrix active zone

  3. XM_031897618.1 → XP_031753478.1  ELKS/Rab6-interacting/CAST family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QP66, A0A8J1J6I6
    Related
    ENSXETP00000071077.2, ENSXETT00000102935.2
    Conserved Domains (2) summary
    pfam09457
    Location:1088 → 1128
    RBD-FIP; FIP domain
    pfam10174
    Location:155 → 1001
    Cast; RIM-binding protein of the cytomatrix active zone

  4. XM_031897622.1 → XP_031753482.1  ELKS/Rab6-interacting/CAST family member 1 isoform X5

    UniProtKB/TrEMBL
    A0A6I8S4C4, A0A8J1J6I7
    Conserved Domains (2) summary
    pfam09457
    Location:1046 → 1086
    RBD-FIP; FIP domain
    pfam10174
    Location:155 → 959
    Cast; RIM-binding protein of the cytomatrix active zone

  5. XM_031897619.1 → XP_031753479.1  ELKS/Rab6-interacting/CAST family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8Q514, A0A6I8QP66
    Related
    ENSXETP00000064643.2, ENSXETT00000101273.2
    Conserved Domains (2) summary
    pfam09457
    Location:1084 → 1124
    RBD-FIP; FIP domain
    pfam10174
    Location:155 → 997
    Cast; RIM-binding protein of the cytomatrix active zone

  6. XM_031897624.1 → XP_031753484.1  ELKS/Rab6-interacting/CAST family member 1 isoform X7

    UniProtKB/TrEMBL
    A0A6I8S4C4, A0A803KFP3
    Related
    ENSXETP00000119095.1, ENSXETT00000121522.1
    Conserved Domains (2) summary
    pfam09457
    Location:1042 → 1082
    RBD-FIP; FIP domain
    pfam10174
    Location:155 → 955
    Cast; RIM-binding protein of the cytomatrix active zone

  7. XM_031897620.1 → XP_031753480.1  ELKS/Rab6-interacting/CAST family member 1 isoform X3

    UniProtKB/TrEMBL
    A0A6I8QP66, A0A6I8SQD7, F7DHL0
    Related
    ENSXETP00000099962.2, ENSXETT00000067221.2
    Conserved Domains (2) summary
    pfam09457
    Location:1073 → 1113
    RBD-FIP; FIP domain
    pfam10174
    Location:155 → 986
    Cast; RIM-binding protein of the cytomatrix active zone

  8. XM_031897627.1 → XP_031753487.1  ELKS/Rab6-interacting/CAST family member 1 isoform X10

    UniProtKB/TrEMBL
    A0A6I8R2D3, A0A8J1J6J1
    Conserved Domains (1) summary
    pfam10174
    Location:155 → 957
    Cast; RIM-binding protein of the cytomatrix active zone

  9. XM_031897631.1 → XP_031753491.1  ELKS/Rab6-interacting/CAST family member 1 isoform X14

    UniProtKB/TrEMBL
    A0A6I8R2D3, A0A8J1JA08
    Conserved Domains (1) summary
    pfam10174
    Location:155 → 915
    Cast; RIM-binding protein of the cytomatrix active zone

  10. XM_031897626.1 → XP_031753486.1  ELKS/Rab6-interacting/CAST family member 1 isoform X9

    UniProtKB/TrEMBL
    A0A8J1JA03, F7DHJ9
    Conserved Domains (1) summary
    pfam10174
    Location:155 → 1001
    Cast; RIM-binding protein of the cytomatrix active zone

  11. XM_031897629.1 → XP_031753489.1  ELKS/Rab6-interacting/CAST family member 1 isoform X12

    UniProtKB/TrEMBL
    A0A6I8R2D3, A0A8J1J6J5
    Conserved Domains (1) summary
    pfam10174
    Location:155 → 946
    Cast; RIM-binding protein of the cytomatrix active zone

  12. XM_031897628.1 → XP_031753488.1  ELKS/Rab6-interacting/CAST family member 1 isoform X11

    UniProtKB/TrEMBL
    A0A8J1J6J8, F7DHJ9
    Conserved Domains (1) summary
    pfam10174
    Location:155 → 959
    Cast; RIM-binding protein of the cytomatrix active zone

  13. XM_031897630.1 → XP_031753490.1  ELKS/Rab6-interacting/CAST family member 1 isoform X13

    UniProtKB/TrEMBL
    A0A8J1J8Z2, F7DHJ9
    Conserved Domains (1) summary
    pfam10174
    Location:155 → 955
    Cast; RIM-binding protein of the cytomatrix active zone

  14. XM_031897625.1 → XP_031753485.1  ELKS/Rab6-interacting/CAST family member 1 isoform X8

    UniProtKB/TrEMBL
    A0A8J1J8Y7, F7DHJ9
    Related
    ENSXETP00000076146.2, ENSXETT00000103177.2
    Conserved Domains (1) summary
    pfam10174
    Location:155 → 1001
    Cast; RIM-binding protein of the cytomatrix active zone

RNA

  1. XR_004221847.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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