mex3d mex-3 RNA binding family member D [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: mex3dprovided by Xenbase
Official Full Name: mex-3 RNA binding family member Dprovided by Xenbase
Primary source: Xenbase:XB-GENE-493006
See related: AllianceGenome:Xenbase:XB-GENE-493006
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: mex3; tino; rkhd1; rnf193; ok/sw-cl.4
Summary: Predicted to enable RNA binding activity and metal ion binding activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human MEX3D (mex-3 RNA binding family member D). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	1	NC_030677.2 (98731661..98734589)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	1	NC_030677.1 (79762892..79765820)

Chromosome 1 - NC_030677.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: RNA-binding protein MEX3D

Names: mex-3 homolog D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001123472.1 → NP_001116944.1 RNA-binding protein MEX3D

See identical proteins and their annotated locations for NP_001116944.1

Status: PROVISIONAL

Source sequence(s)

BC159374

UniProtKB/TrEMBL

B0JZY2

Conserved Domains (3) summary

smart00322
Location:95 → 160

KH; K homology RNA-binding domain

cd00105
Location:2 → 63

KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

pfam13920
Location:388 → 433

zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)