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SCFD1 sec1 family domain containing 1 [ Bos taurus (domestic cattle) ]

Gene ID: 100140328, updated on 4-Oct-2024

Summary

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Official Symbol
SCFD1provided by VGNC
Official Full Name
sec1 family domain containing 1provided by VGNC
Primary source
VGNC:VGNC:34330
See related
BGD:BT26601; Ensembl:ENSBTAG00000017565
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SCFD1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (41268756..41381804)

Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112443227 Neighboring gene G2/M-phase specific E3 ubiquitin protein ligase Neighboring gene oxysterol-binding protein-related protein 9-like Neighboring gene small ribosomal subunit protein eS25-like Neighboring gene uncharacterized LOC104975394 Neighboring gene cochlin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The small GTPase RAB28 is required for phagocytosis of cone outer segments by the murine retinal pigmented epithelium. Ying G, et al. J Biol Chem, 2018 Nov 9. PMID 30228185, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sec1 family domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191365.1 → NP_001178294.1  sec1 family domain-containing protein 1

    See identical proteins and their annotated locations for NP_001178294.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000021
    UniProtKB/TrEMBL
    A0AAA9SSF0, A0AAA9TYT4
    Related
    ENSBTAP00000087042.1, ENSBTAT00000111144.1
    Conserved Domains (1) summary
    pfam00995
    Location:43 → 628
    Sec1; Sec1 family

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    41268756..41381804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024981582.2 → XP_024837350.1  sec1 family domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    E1BG76
    Conserved Domains (1) summary
    pfam00995
    Location:2 → 562
    Sec1; Sec1 family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials