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SHISA9 shisa family member 9 [ Bos taurus (domestic cattle) ]

Gene ID: 100139490, updated on 4-Oct-2024

Summary

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Gene symbol
SHISA9
Gene description
shisa family member 9
See related
BGD:BT19260; Ensembl:ENSBTAG00000046399
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
CKAMP44
Orthologs
human mouse all
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Genomic context

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See SHISA9 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (11633245..12158399)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 29 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene calcineurin like phosphoesterase domain containing 1 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene uncharacterized LOC132343842 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene uncharacterized LOC132343905 Neighboring gene uncharacterized LOC132343843

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CKAMP44: a brain-specific protein attenuating short-term synaptic plasticity in the dentate gyrus. von Engelhardt J, et al. Science, 2010 Mar 19. PMID 20185686
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Functionally characterizes an homologous mouse gene.
    Title: CKAMP44: a brain-specific protein attenuating short-term synaptic plasticity in the dentate gyrus.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of AMPA receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of short-term neuronal synaptic plasticity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AMPA glutamate receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic spine membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein shisa-9
Names
cystine-knot AMPAR modulating protein
shisa homolog 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145203.1 → NP_001138675.2  protein shisa-9 precursor

    Status: VALIDATED

    Source sequence(s)
    EH177874, EH181025
    Conserved Domains (1) summary
    pfam13908
    Location:72 → 255
    Shisa; Wnt and FGF inhibitory regulator

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    11633245..12158399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005224678.3 → XP_005224735.1  protein shisa-9 isoform X1

    Related
    ENSBTAP00000054165.3, ENSBTAT00000065298.3
    Conserved Domains (1) summary
    pfam13908
    Location:113 → 305
    Shisa; Wnt and FGF inhibitory regulator

  2. XM_005224679.3 → XP_005224736.1  protein shisa-9 isoform X2

    UniProtKB/TrEMBL
    A0AAA9SSB4
    Related
    ENSBTAP00000088224.1, ENSBTAT00000129003.1
    Conserved Domains (1) summary
    pfam13908
    Location:113 → 305
    Shisa; Wnt and FGF inhibitory regulator
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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