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vps72 vacuolar protein sorting 72 homolog [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100135721, updated on 17-Aug-2024

Summary

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Official Symbol
vps72provided by Xenbase
Official Full Name
vacuolar protein sorting 72 homologprovided by Xenbase
Primary source
Xenbase:XB-GENE-989807
See related
Ensembl:ENSXETG00000008139
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
yl1; swc2; yl-1; tcfl1
Orthologs
human mouse all
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Genomic context

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See vps72 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (137929988..137935167, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (114690266..114694817, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene LysM, putative peptidoglycan-binding, domain containing 1 Neighboring gene sodium channel modifier 1 Neighboring gene tropomodulin 4 Neighboring gene NOP9 nucleolar protein Neighboring gene KH domain containing 4, pre-mRNA splicing factor Neighboring gene small Cajal body-specific RNA 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP-dependent H2AZ histone chaperone activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within transcription initiation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 72 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    137929988..137935167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002937270.5 → XP_002937316.2  vacuolar protein sorting-associated protein 72 homolog

    UniProtKB/TrEMBL
    A0A6I8SH87
    Related
    ENSXETP00000096605.1, ENSXETT00000080087.2
    Conserved Domains (2) summary
    pfam05764
    Location:7 → 217
    YL1; YL1 nuclear protein
    pfam08265
    Location:285 → 313
    YL1_C; YL1 nuclear protein C-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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