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il17d interleukin 17D [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100135708, updated on 4-Nov-2024

Summary

Official Symbol
il17dprovided by Xenbase
Official Full Name
interleukin 17Dprovided by Xenbase
Primary source
Xenbase:XB-GENE-490214
See related
Ensembl:ENSXETG00000035807 AllianceGenome:Xenbase:XB-GENE-490214
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
il-17d
Summary
Predicted to enable cytokine activity. Predicted to act upstream of or within inflammatory response. Predicted to be located in extracellular space. Human ortholog(s) of this gene implicated in hepatitis B; obesity; rickets; type 1 diabetes mellitus; and vitamin D-dependent rickets type 1A. Orthologous to several human genes including CYP27B1 (cytochrome P450 family 27 subfamily B member 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See il17d in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (158991120..159004351)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (155894427..155907418)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene crystallin lambda 1 Neighboring gene intraflagellar transport 88 Neighboring gene EEF1A lysine methyltransferase 1 Neighboring gene exportin 4

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within inflammatory response IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114247.1NP_001107719.1  interleukin-17D precursor

    See identical proteins and their annotated locations for NP_001107719.1

    Status: PROVISIONAL

    Source sequence(s)
    BC158482
    UniProtKB/TrEMBL
    A0A803JG82, B0BML6
    Related
    ENSXETP00000106904.1, ENSXETT00000114945.1
    Conserved Domains (1) summary
    pfam06083
    Location:89169
    IL17; Interleukin-17

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    158991120..159004351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012956404.3XP_012811858.1  interleukin-17D isoform X1

    UniProtKB/TrEMBL
    A0A6I8RHS6, A0A803JG82
    Related
    ENSXETP00000084463.1, ENSXETT00000092225.2
    Conserved Domains (1) summary
    pfam06083
    Location:104181
    IL17; Interleukin-17