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WASIR2 WASH and IL9R antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 100132169, updated on 22-Oct-2024

Summary

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Official Symbol
WASIR2provided by HGNC
Official Full Name
WASH and IL9R antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:38609
See related
Ensembl:ENSG00000231439 AllianceGenome:HGNC:38609
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00286A
Expression
Biased expression in ovary (RPKM 2.3), thyroid (RPKM 0.7) and 8 other tissues See more
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Genomic context

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See WASIR2 in Genome Data Viewer
Location:
16p13.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (22916..25114)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (15844..18037)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (72916..75114)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:62868-63502 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:63503-64136 Neighboring gene DEAD/H-box helicase 11 like 10 (pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:64137-64770 Neighboring gene WASP family homolog 4, pseudogene Neighboring gene microRNA 6859-4 Neighboring gene IL9R pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:83993-84764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10197 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:88640-89187 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89188-89734 Neighboring gene RNA polymerase III subunit K Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:102874-103400

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16. Daniels RJ, et al. Hum Mol Genet, 2001 Feb 15. PMID 11157797

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • WASH and IL9R antisense RNA 2 (non-protein coding)
  • non-protein coding RNA 286A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130735.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL539368, BC032901, Z84723
    Related
    ENST00000527434.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    22916..25114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    15844..18037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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