SNAP25-AS1 SNAP25 antisense RNA 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: SNAP25-AS1provided by HGNC
Official Full Name: SNAP25 antisense RNA 1provided by HGNC
Primary source: HGNC:HGNC:44312
See related: Ensembl:ENSG00000227906 AllianceGenome:HGNC:44312
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary: Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in brain (RPKM 1.6), adrenal (RPKM 0.3) and 2 other tissues See more
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Genomic context

Location:: 20p12.2

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	20	NC_000020.11 (10023812..10219506, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	20	NC_060944.1 (10066695..10262371, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	20	NC_000020.10 (10004460..10200154, complement)

Chromosome 20 - NC_000020.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Markers

WI-11410 (e-PCR)
- UniSTS:271

D20S504 (e-PCR)
- UniSTS:150305

D20S1075 (e-PCR)
- UniSTS:61011

RH47929 (e-PCR)
- UniSTS:23913

Z94390 (e-PCR)
- UniSTS:23153

AB072772 (e-PCR)
- UniSTS:480130

SHGC-132109 (e-PCR)
- UniSTS:170652

STS-H93070 (e-PCR)
- UniSTS:28094

SHGC-145770 (e-PCR)
- UniSTS:174782

D20S162 (e-PCR), detects polymorphism
- UniSTS:36837

D20S901 (e-PCR)
- UniSTS:35817

Other Names

SNAP25 antisense RNA 1 (non-protein coding)

Gene Ontology Provided by GOA

Process	Evidence Code	Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of signal recognition particle, endoplasmic reticulum targeting	IEA Inferred from Electronic Annotation more info

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.