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LOC100130698 uncharacterized LOC100130698 [ Homo sapiens (human) ]

Gene ID: 100130698, updated on 17-Sep-2024

Summary

Gene symbol
LOC100130698
Gene description
uncharacterized LOC100130698
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.7) See more
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Genomic context

See LOC100130698 in Genome Data Viewer
Location:
10q22.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (80247758..80255408)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (81116857..81124507)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (82007514..82015164)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 857 Neighboring gene ribosomal protein S12 pseudogene 2 Neighboring gene uncharacterized LOC124902470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3652 Neighboring gene eukaryotic translation initiation factor 5A pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3653 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:82016108-82016608 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:82016609-82017109 Neighboring gene Sharpr-MPRA regulatory region 3184 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:82024050-82024581 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:82024582-82025112 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:82032694-82033893 Neighboring gene methionine adenosyltransferase 1A Neighboring gene Sharpr-MPRA regulatory region 13640 Neighboring gene zinc finger protein 519 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136612.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL359195, HY021529

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    80247758..80255408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    81116857..81124507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)