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jade2 jade family PHD finger 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100127822, updated on 4-Nov-2024

Summary

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Official Symbol
jade2provided by Xenbase
Official Full Name
jade family PHD finger 2provided by Xenbase
Primary source
Xenbase:XB-GENE-5880521
See related
Ensembl:ENSXETG00000010410 AllianceGenome:Xenbase:XB-GENE-5880521
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
phf15
Summary
Predicted to enable metal ion binding activity. Orthologous to human JADE2 (jade family PHD finger 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See jade2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (26297579..26418133, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (17208264..17325518, complement)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene SEC24 homolog A, COPII coat complex component Neighboring gene secretion associated, Ras related GTPase 1B Neighboring gene stimulator of interferon response cGAMP interactor 1 Neighboring gene CDKN2A interacting protein N-terminal like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Jade-2
Names
PHD finger protein 15
NP_001361747.1
XP_012813968.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374818.1 → NP_001361747.1  E3 ubiquitin-protein ligase Jade-2

    Status: VALIDATED

    Source sequence(s)
    AAMC03010717
    UniProtKB/TrEMBL
    A0A6I8R2Y0, A0A6I8R628
    Related
    ENSXETP00000077391.2, ENSXETT00000088660.2
    Conserved Domains (2) summary
    COG5141
    Location:135 → 512
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15705
    Location:252 → 362
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    26297579..26418133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958514.3 → XP_012813968.1  E3 ubiquitin-protein ligase Jade-2 isoform X1

    See identical proteins and their annotated locations for XP_012813968.1

    UniProtKB/TrEMBL
    A0A6I8R2Y0, A0A6I8R628
    Related
    ENSXETP00000076307.2, ENSXETT00000076406.2
    Conserved Domains (2) summary
    COG5141
    Location:135 → 512
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15705
    Location:252 → 362
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001113130.1: Suppressed sequence

    Description
    NM_001113130.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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