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bach1 BTB and CNC homology 1, basic leucine zipper transcription factor 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100125783, updated on 17-Aug-2024

Summary

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Official Symbol
bach1provided by Xenbase
Official Full Name
BTB and CNC homology 1, basic leucine zipper transcription factor 1provided by Xenbase
Primary source
Xenbase:XB-GENE-957116
See related
Ensembl:ENSXETG00000020266
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See bach1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (16542901..16578490, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (12407083..12442651, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene circumsporozoite protein-like Neighboring gene glutamate receptor, ionotropic, kainate 1 Neighboring gene uncharacterized LOC105946610 Neighboring gene MAP3K7 C-terminal like Neighboring gene chaperonin containing TCP1 subunit 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transcription regulator protein BACH1
Names
basic leucine zipper transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    16542901..16578490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002939146.5 → XP_002939192.1  transcription regulator protein BACH1

    See identical proteins and their annotated locations for XP_002939192.1

    UniProtKB/TrEMBL
    F7BYY6
    Related
    ENSXETP00000043713.4, ENSXETT00000043713.5
    Conserved Domains (2) summary
    cd14719
    Location:553 → 623
    bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
    cl38908
    Location:20 → 139
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  2. XM_012958024.3 → XP_012813478.1  transcription regulator protein BACH1

    See identical proteins and their annotated locations for XP_012813478.1

    UniProtKB/TrEMBL
    F7BYY6
    Related
    ENSXETP00000112742.1, ENSXETT00000111929.1
    Conserved Domains (2) summary
    cd14719
    Location:553 → 623
    bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
    cl38908
    Location:20 → 139
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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