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arl13b ARF like GTPase 13B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100124913, updated on 4-Nov-2024

Summary

Official Symbol
arl13bprovided by Xenbase
Official Full Name
ARF like GTPase 13Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-1014460
See related
Ensembl:ENSXETG00000032383 AllianceGenome:Xenbase:XB-GENE-1014460
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
jbts8; arl2l1
Summary
Predicted to enable GTP binding activity and GTPase activity. Human ortholog(s) of this gene implicated in Joubert syndrome 8. Orthologous to human ARL13B (ADP ribosylation factor like GTPase 13B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See arl13b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (21793374..21825261, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (17627875..17660028, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene EPH receptor A6 Neighboring gene NOP2/Sun RNA methyltransferase family member 3 Neighboring gene protein spinster homolog 1-like Neighboring gene syntaxin 19 Neighboring gene protein S

Genomic regions, transcripts, and products

General protein information

Preferred Names
ADP-ribosylation factor-like protein 13B
Names
ADP ribosylation factor like GTPase 13B
ADP-ribosylation factor-like 13B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001197155.1NP_001184084.1  ADP-ribosylation factor-like protein 13B

    See identical proteins and their annotated locations for NP_001184084.1

    Status: VALIDATED

    Source sequence(s)
    AAMC03006081, AAMC03006082
    UniProtKB/TrEMBL
    A0A803JT78, A0A8J0QFG5
    Related
    ENSXETP00000058527.3, ENSXETT00000063083.3
    Conserved Domains (1) summary
    cd04161
    Location:23189
    Arl2l1_Arl13_like; Arl2-like protein 1 (Arl2l1) and Arl13

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    21793374..21825261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012956292.3XP_012811746.1  ADP-ribosylation factor-like protein 13B isoform X1

    See identical proteins and their annotated locations for XP_012811746.1

    UniProtKB/TrEMBL
    A0A803JT78, A0A8J0QFG5
    Related
    ENSXETP00000111179.1, ENSXETT00000119861.1
    Conserved Domains (1) summary
    cd04161
    Location:23189
    Arl2l1_Arl13_like; Arl2-like protein 1 (Arl2l1) and Arl13