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ddx27 DEAD-box helicase 27 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100101759, updated on 4-Nov-2024

Summary

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Official Symbol
ddx27provided by Xenbase
Official Full Name
DEAD-box helicase 27provided by Xenbase
Primary source
Xenbase:XB-GENE-923338
See related
Ensembl:ENSXETG00000017231 AllianceGenome:Xenbase:XB-GENE-923338
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
rhlp; rrp3p; pp3241; hspc259
Summary
Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be located in cytoplasm. Orthologous to human DDX27 (DEAD-box helicase 27). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ddx27 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (142351760..142363808, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (131151581..131163814, complement)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene complement C3 Neighboring gene uncharacterized LOC116409519 Neighboring gene uncharacterized LOC100490837 Neighboring gene arrestin beta 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX27
Names
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    142351760..142363808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012953418.3 → XP_012808872.2  probable ATP-dependent RNA helicase DDX27

    UniProtKB/TrEMBL
    A0A6I8R9X5, A0A8J0SBQ3
    Related
    ENSXETP00000078701.2, ENSXETT00000068605.2
    Conserved Domains (2) summary
    COG0513
    Location:184 → 663
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17947
    Location:194 → 389
    DEADc_DDX27; DEAD-box helicase domain of DEAD box protein 27
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials