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SP6 Sp6 transcription factor [ Equus caballus (horse) ]

Gene ID: 100055446, updated on 17-Aug-2024

Summary

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Official Symbol
SP6provided by VGNC
Official Full Name
Sp6 transcription factorprovided by VGNC
Primary source
VGNC:VGNC:23467
See related
Ensembl:ENSECAG00000012853
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SP6 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 11 NC_009154.3 (24093883..24099790, complement)

Chromosome 11 - NC_009154.3Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 46 Neighboring gene secernin 2 Neighboring gene microRNA mir-9103 Neighboring gene uncharacterized LOC111775654 Neighboring gene Sp2 transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009154.3 Chromosome 11 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009154.3 Reference EquCab3.0 Primary Assembly

    Range
    24093883..24099790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023652659.1 → XP_023508427.1  transcription factor Sp6

    UniProtKB/TrEMBL
    A0A9L0T6L6, F6S913
    Related
    ENSECAP00000079799.1, ENSECAT00000138584.1
    Conserved Domains (2) summary
    COG5048
    Location:261 → 336
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:259 → 278
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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