U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

fga fibrinogen alpha chain [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100038060, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
fgaprovided by Xenbase
Official Full Name
fibrinogen alpha chainprovided by Xenbase
Primary source
Xenbase:XB-GENE-478771
See related
Ensembl:ENSXETG00000026093
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
fib2; fibrinogen
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See fga in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (54510727..54521750)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (45271099..45281710)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116411984 Neighboring gene fibrinogen gamma chain Neighboring gene fibrinogen alpha chain Neighboring gene fibrinogen beta chain

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC53620

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within blood coagulation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within blood coagulation, fibrin clot formation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within platelet activation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within platelet aggregation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of blood coagulation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein polymerization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
part_of fibrinogen complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
fibrinogen alpha chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    54510727..54521750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002933489.5 → XP_002933535.3  fibrinogen alpha chain

    UniProtKB/TrEMBL
    F6SP35
    Related
    ENSXETP00000048523.5, ENSXETT00000048523.5
    Conserved Domains (3) summary
    cd00087
    Location:523 → 757
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam08702
    Location:51 → 191
    Fib_alpha; Fibrinogen alpha/beta chain family
    pfam12160
    Location:299 → 372
    Fibrinogen_aC; Fibrinogen alpha C domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials