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zbtb21 zinc finger and BTB domain containing 21 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100036678, updated on 4-Nov-2024

Summary

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Official Symbol
zbtb21provided by Xenbase
Official Full Name
zinc finger and BTB domain containing 21provided by Xenbase
Primary source
Xenbase:XB-GENE-995449
See related
Ensembl:ENSXETG00000039366 AllianceGenome:Xenbase:XB-GENE-995449
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
zfn295; znf295
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB21 (zinc finger and BTB domain containing 21). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See zbtb21 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (9590276..9606520)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (5609473..5615394)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene cell wall protein DAN4-like Neighboring gene serine-rich adhesin for platelets-like Neighboring gene uromodulin like 1 Neighboring gene C2 calcium-dependent domain containing 2 Neighboring gene uncharacterized LOC116408746 Neighboring gene PR domain 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 21
Names
zinc finger protein 295

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097230.1 → NP_001090699.1  zinc finger and BTB domain-containing protein 21

    See identical proteins and their annotated locations for NP_001090699.1

    Status: PROVISIONAL

    Source sequence(s)
    BC128621
    UniProtKB/TrEMBL
    A1A5F0
    Related
    ENSXETP00000109992.1, ENSXETT00000118889.1
    Conserved Domains (4) summary
    sd00017
    Location:514 → 535
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:875 → 895
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18209
    Location:12 → 123
    BTB_POZ_ZBTB21_ZNF295; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 21 (ZBTB21)
    pfam18450
    Location:711 → 738
    zf_C2H2_6; Zinc Finger domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    9590276..9606520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031895543.1 → XP_031751403.1  zinc finger and BTB domain-containing protein 21 isoform X1

    UniProtKB/TrEMBL
    A1A5F0
    Related
    ENSXETP00000094878.1, ENSXETT00000068543.2
    Conserved Domains (4) summary
    sd00017
    Location:514 → 535
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:875 → 895
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18209
    Location:12 → 123
    BTB_POZ_ZBTB21_ZNF295; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 21 (ZBTB21)
    pfam18450
    Location:711 → 738
    zf_C2H2_6; Zinc Finger domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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