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LOC100034197 Equ c1 [ Equus caballus (horse) ]

Gene ID: 100034197, updated on 15-Aug-2024

Summary

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Gene symbol
LOC100034197
Gene description
Equ c1
See related
Ensembl:ENSECAG00000034517
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
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Genomic context

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See LOC100034197 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 25 NC_009168.3 (18315130..18319273, complement)

Chromosome 25 - NC_009168.3Genomic Context describing neighboring genes Neighboring gene calicin-like Neighboring gene major allergen Equ c 1 Neighboring gene calicin-like Neighboring gene major allergen Equ c 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009168.3 Chromosome 25 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Biochemical characterization and surfactant properties of horse allergens. Goubran Botros H, et al. Eur J Biochem, 2001 May. PMID 11358533
  2. Crystal structure of the allergen Equ c 1. A dimeric lipocalin with restricted IgE-reactive epitopes. Lascombe MB, et al. J Biol Chem, 2000 Jul 14. PMID 10787420
  3. cDNA cloning and sequencing reveal the major horse allergen Equ c1 to be a glycoprotein member of the lipocalin superfamily. Gregoire C, et al. J Biol Chem, 1996 Dec 20. PMID 8955138
  4. Species specificity in major urinary proteins by parallel evolution. Logan DW, et al. PLoS One, 2008 Sep 25. PMID 18815613, Free PMC Article
  5. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables odorant binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
major allergen Equ c 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082497.2 → NP_001075966.1  major allergen Equ c 1 precursor

    See identical proteins and their annotated locations for NP_001075966.1

    Status: PROVISIONAL

    Source sequence(s)
    U70823
    UniProtKB/Swiss-Prot
    Q95182
    Related
    ENSECAP00000000397.2, ENSECAT00000000508.3
    Conserved Domains (1) summary
    pfam00061
    Location:34 → 174
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009168.3 Reference EquCab3.0 Primary Assembly

    Range
    18315130..18319273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q95182.1 GenPept UniProtKB/Swiss-Prot:Q95182

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials