GEO DataSets

(Submitter supplied) GmZF351 has previously been characterized as a seed preferred gene participating mainly in oil accumulation. Here we report that over-expression of GmZF351 confers drought and salt tolerance in transgenic soybean seedlings. When soybean seedlings grew to V1 stage, leaves and roots were cut for RNA sequencing. Transcriptome analysis shows that GmZF351 regulates expression of downstream genes related to abiotic stress process.

Organism:

Glycine max

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19246

12 Samples

Download data: TXT

(Submitter supplied) We examined the transcriptome induced by GmNAC81 overexpression and leaf senescence and showed that GmNAC81 further modulates leaf senescence by regulating an extensive repertoire of functionally characterized senescence-associated genes (SAGs). GmNAC81 overexpression also uncovered the regulation of typical drought-responsive genes. Key regulators and effectors of ABA signaling were suppressed by GmNAC81 overexpression. 

Organism:

Glycine max

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19246

12 Samples

Download data: CSV

(Submitter supplied) To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.04G093300 in early maturation embryos using ChIP-seq.

Organism:

Glycine max

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL19246

6 Samples

Download data: NARROWPEAK

(Submitter supplied) To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.07G038400 in early maturation embryos using ChIP-seq.

Organism:

Glycine max

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL19246

4 Samples

Download data: NARROWPEAK

(Submitter supplied) Understanding the molecular processes of seed development is important especially in agronomic crops that produce large amounts of nutrient reserves. Because soybean is a vital source of vegetable protein worldwide, producers are concerned about increasing the total amount of protein in the seed without substantially lowering the amount of oil, another economically important product. Here we describe a transgenic soybean line with increased protein and protein/oil ratio, containing an average of 42.2% protein vs. more...

Organism:

Glycine max

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL21998 GPL19246

26 Samples

Download data: XLSX

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Glycine max

Type:

Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platform:

GPL19246

36 Samples

Download data: TXT

(Submitter supplied) Profiling the transcriptome, spliceome, and methylome of developing soybean nodules reveals insights into their associations that may configure transcriptome complexity and proteome diversity

Organism:

Glycine max

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19246

18 Samples

Download data: TXT

(Submitter supplied) Profiling the transcriptome, spliceome, and methylome of developing soybean nodules reveals insights into their associations that may configure transcriptome complexity and proteome diversity

Organism:

Glycine max

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL19246

18 Samples

Download data

(Submitter supplied) RNA-seq was used to characterize gene expression in soybean from a wide range of tissues. The primary focus of the project was small RNAs, and the identification of microRNAs and phased siRNA-generating loci, but RNA-seq data were generated from the same samples. This project was supported by the United Soybean Board.

Organism:

Glycine max

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL19246

16 Samples

Download data: TXT

(Submitter supplied) Methylome changes mediated by the soybean cyst nematode resistance gene GmSHMT08

Organism:

Glycine max

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19246

12 Samples

Download data: TXT

(Submitter supplied) Methylome changes mediated by the soybean cyst nematode resistance gene GmSHMT08

Organism:

Glycine max

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL19246

18 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Glycine max

Type:

Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platform:

GPL19246

30 Samples

Download data: TXT

(Submitter supplied) To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.08G357600 in mid-maturation embryos using ChIP-seq.

Organism:

Glycine max

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL19246

4 Samples

Download data: NARROWPEAK

(Submitter supplied) To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.06G314400 in early maturation embryos using ChIP-seq.

Organism:

Glycine max

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL19246

4 Samples

Download data: NARROWPEAK

(Submitter supplied) One fascinating aspect of plant pathogen co-evolution is that pathogens use effectors to alter a broad range of host responses. RNA splicing functions in many physiological processes including plant immunity. However, how plant pathogens manipulate host RNA splicing process remains unknown. Here we demonstrate that PsAvr3c, an avirulence effector from oomycete pathogen Phytophthora sojae, physically binds to and stabilizes soybean (Glycine max) serine/arginine/lysine rich proteins GmSRKPs in vivo. more...

Organism:

Glycine max

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19246

3 Samples

Download data: BW

(Submitter supplied) Tissue culture is a major method for plant regeneration and for production of transgenic plants. Thus far, our knowledge of the dynamic epigenomic during tissue culture is limited. In this study, we generated epigenomes from nine different stages throughout the tissue culture process and found significant genome-wide increases of DNA methylation throughout the soybean genome. This change mostly happens in CHH (H = A, T, C) context and targets transposable elements (TEs). more...

Organism:

Glycine max

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL19246

59 Samples

Download data: TSV, TXT

(Submitter supplied) To dissect the gene regulatory networks operating during soybean seed development, we identified the binding sites genome-wide for transcription factor in soybean seeds during seed development using ChIP-seq

Organism:

Glycine max

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL19246

2 Samples

Download data: NARROWPEAK

(Submitter supplied) To dissect the gene regulatory networks operating during soybean seed development, we identified the binding sites genome-wide for transcription factor in soybean seeds during seed development using ChIP-seq

Organism:

Glycine max

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL28801 GPL19246

8 Samples

Download data: NARROWPEAK

(Submitter supplied) To dissect the gene regulatory networks operating during soybean seed development, we identified the binding sites genome-wide for transcription factor in soybean seeds during seed development using ChIP-seq

Organism:

Glycine max

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL19246

2 Samples

Download data: NARROWPEAK

(Submitter supplied) Purpose: A time-course transcriptome study to identify probable GA-responsive genes in soybean embryonic axes during seed germination. Methods: Seeds were germinated in the presence or absence of 200 µM PBZ. Seeds were germinated in 28°C temperature and 12/12h photoperiod (dark/light) and harvested at 12, 24 and 36 hours after imbibition (HAI). Three biological replicates were performed. Results: Identification of GA-responsive genes during germination in Glycine max.

Organism:

Glycine max

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19246

18 Samples

Download data: TXT