GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Solanum lycopersicum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27957

8 Samples

Download data: MTX, TSV

(Submitter supplied) This experiment aimed to identify protoplast-induced genes in tomato seedling, for future use in single cell datasets.

Organism:

Solanum lycopersicum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27957

6 Samples

Download data: CSV

(Submitter supplied) Single cell datasets of tomato (Solanum lycopersicum) seedling roots grown in MS plates.

Organism:

Solanum lycopersicum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27957

2 Samples

Download data: MTX, TSV

(Submitter supplied) Here we show that differntiated endodermal cells have a distinct transcriptional response to auxin treatment. We perform a time serie of 10µM NAA treatment and sample at t=0, 2, 4, 8, 16 and 24hrs after NAA treatment. For the time series we compared roots of the solitairy root 1 (slr-1) mutant to the CASP1::shy2-2/slr-1 double mutant. We also provide RNAseq data of slr-1, CASP1::shy2-2 and CASP1::shy2-2/slr-1 at t=0

Organism:

Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17639

36 Samples

Download data: TXT

(Submitter supplied) ABSTRACT: Background: Though central to our understanding of how roots perform their vital function of scavenging water and solutes from the soil, no direct genetic evidence currently exists to support the foundational model that suberin acts to form a chemical barrier limiting the extracellular, or apoplastic, transport of water and solutes in plant roots. Methodologies/Principle Findings: Using the newly characterized enhanced suberin1 (esb1) mutant, we established a connection in Arabidopsis thaliana between suberin in the root, and both water movement through the plant, and solute accumulation in the shoot. more...

Organism:

Arabidopsis thaliana

Type:

Genome variation profiling by array; Genome variation profiling by genome tiling array

Platforms:

GPL198 GPL10978

10 Samples

Download data: CEL

(Submitter supplied) We have identified the causal genes, which is MYB36, of ionome mutants. To identify the genes regulated by MYB36, RNAs prepared from two alleles were applied for the micoarray analysis.

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array

Platform:

GPL17416

9 Samples

Download data: CEL

(Submitter supplied) Plant species have evolved specialized cell types and regulatory programs. To understand this diversity, we profiled tomato cell type translatomes and chromatin accessibility. While cell type expression signatures are diverse, some genes exhibit robust cell type expression across time and environments. Using xylem differentiation as a model, newly described, repurposed and conserved genes illustrate this spatial variation. more...

Organism:

Solanum lycopersicum; Oryza sativa Japonica Group

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL21762 GPL25655 GPL21812

145 Samples

Download data: BED, BW, CSV

(Submitter supplied) Internal aeration is crucial for root growth in waterlogged soil. A barrier to radial oxygen loss (ROL) can enhance long- distance oxygen transport via the aerenchyma to the root tip; a higher oxygen concentration at the apex enables root growth into anoxic soil. The ROL barrier is formed within the outer part of roots (OPR). Suberin and/or lignin depos- ited in cell walls are thought to contribute to the barrier, but it is unclear which compound is the main constituent. more...

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

18 Samples

Download data: TXT

(Submitter supplied) Schengen-pathway modulates the phenylpropanoid pathway and induces defense-related mechanisms

Organism:

Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19580

192 Samples

Download data: TXT