GEO DataSets

(Submitter supplied) Botryosphaeriaceae is an important fungal family that can colonize a wide range of woody hosts including economically important plants and cause serious diseases worldwide. To uncover the virulence variation in Lasiodiplodia theobromae, we sequenced the transcriptome of Las1 in L. theobromae inoculated with the stems of V.vinifera using dual-RNAseq method. We found a lot of expanded genes were induced after inoculated with grapevine compared with the transcriptome of Las1 that was maintained in PDA under the same condition.

Organism:

Lasiodiplodia theobromae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL31058

6 Samples

Download data: FA, TXT

(Submitter supplied) We report the use of a Dual RNA-Seq approach to investigate the interaction of grapevine with the Botryosphaeria dieback agent L. theobromae. The aim of this work was to (1) identify pathogenicity factors produced by L. theobromae, and (2) determine the V. vinifera defence response to the pathogen.

Organism:

Lasiodiplodia theobromae; Vitis vinifera

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL24368 GPL26369

24 Samples

Download data: GFF, TXT

(Submitter supplied) A multi-omics approach was used to understand how temperature affects the molecular mechanisms of pathogenicity of Lasiodiplodia theobromae at different temperatures. The transcriptome (Illumina TruSeq) of LA-SOL3 strain grown at 25 °C and 37 °C was analysed.

Organism:

Lasiodiplodia theobromae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26675

6 Samples

Download data: TXT

(Submitter supplied) Purpose: Lasiodiplodia theobromae is a pathogenic fungus causing Botryosphaeria dieback in grapevine. Heat and drought stress was suggested to promote the disease incidence in recent years, therefore we decided to evaluate the effect of heat on in vitro experiment, adding grapevine wood to simulate the environment in the trunk during in field infection. Methods: Fungal mRNA was extracted from mycellium collected after 49 hours of growth without stress in the presence of GW (GW_noHS) or in its absence (VS_noHS). more...

Organism:

Lasiodiplodia theobromae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL21236

12 Samples

Download data: FASTA, TXT