txid225849[Organism:noexp] - GEO DataSets

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Select item 2000992971.

Using data from RNA sequencing, we investigated the transcriptional changes in a H2O2-evolved strain OE100 under 4˚С and 20 MPa

(Submitter supplied) Purpose: The goal is to investigate how to enhance the adaptability of deep-sea bacterium Shewanella piezotolerans WP3 to low temperature and high pressure by experimental evolution with H2O2 stress

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17267
6 Samples

Download data: TXT

Series

Accession:: GSE99297

ID:: 200099297

SRA Run Selector

Select item 2000822542.

Shewanella piezotolerans WP3 wild-type strain under salt shock

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
18 Samples

Download data

Series

Accession:: GSE82254

ID:: 200082254

Analyze with GEO2R

Select item 2000822533.

Shewanella piezotolerans WP3 wild-type strain salt shock for 90 min

(Submitter supplied) The WP3 strains was cultured at 20°C and salt shocked with 12% (w/v) NaCl for 90 min. The transcriptional profiles after and before salt shock were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GPR

Series

Accession:: GSE82253

ID:: 200082253

Analyze with GEO2R

Select item 2000822524.

Shewanella piezotolerans WP3 wild-type strain salt shock for 60 min

(Submitter supplied) The WP3 strains was cultured at 20°C and salt shocked with 12% (w/v) NaCl for 60 min. The transcriptional profiles after and before salt shock were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GPR

Series

Accession:: GSE82252

ID:: 200082252

Analyze with GEO2R

Select item 2000822515.

Shewanella piezotolerans WP3 wild-type strain salt shock for 30 min

(Submitter supplied) The WP3 strains was cultured at 20°C and salt shocked with 12% (w/v) NaCl for 30 min. The transcriptional profiles after and before salt shock were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GPR

Series

Accession:: GSE82251

ID:: 200082251

Analyze with GEO2R

Select item 2000806686.

Shewanella piezotolerans WP3 wild-type strain at 4°C vs 25°C

(Submitter supplied) The WP3 strains were cultured at 4°C and 25°C, respectively. The transcriptional profiles at these two different temperatures were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GAL, GPR

Series

Accession:: GSE80668

ID:: 200080668

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000822677.

Shewanella piezotolerans WP3 wild-type strain under high hydrostatic pressure

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
12 Samples

Download data: GPR

Series

Accession:: GSE82267

ID:: 200082267

Select item 2000822668.

Shewanella piezotolerans WP3 wild-type strain high hydrostatic pressure for 120 min

(Submitter supplied) The WP3 strains was cultured at 20°C/0.1 MPa, and then was incubated at high hydrostatic pressure (HHP, 50 MPa) for 120 min. The transcriptional profiles after and before HHP shock were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GPR

Series

Accession:: GSE82266

ID:: 200082266

Analyze with GEO2R

Select item 2000822659.

Shewanella piezotolerans WP3 wild-type strain high hydrostatic pressure for 30 min

(Submitter supplied) The WP3 strains was cultured at 20°C/0.1 MPa, and then was incubated at high hydrostatic pressure (HHP, 50 MPa) for 30 min. The transcriptional profiles after and before HHP shock were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GPR

Series

Accession:: GSE82265

ID:: 200082265

Analyze with GEO2R

Select item 20008225910.

Shewanella piezotolerans WP3 wild-type strain under cold shock

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
18 Samples

Download data

Series

Accession:: GSE82259

ID:: 200082259

Select item 20008225811.

Shewanella piezotolerans WP3 wild-type strain cold shock for 90 min

(Submitter supplied) The WP3 strains was cultured at 20°C and cold shocked at 0°C for 90 min. The transcriptional profiles after and before cold shock were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GPR

Series

Accession:: GSE82258

ID:: 200082258

Analyze with GEO2R

Select item 20008225712.

Shewanella piezotolerans WP3 wild-type strain cold shock for 60 min

(Submitter supplied) The WP3 strains was cultured at 20°C and cold shocked at 0°C for 60 min. The transcriptional profiles after and before cold shock were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GPR

Series

Accession:: GSE82257

ID:: 200082257

Analyze with GEO2R

Select item 20008225613.

Shewanella piezotolerans WP3 wild-type strain cold shock for 30 min

(Submitter supplied) The WP3 strains was cultured at 20°C and cold shocked at 0°C for 30 min. The transcriptional profiles after and before cold shock were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GPR

Series

Accession:: GSE82256

ID:: 200082256

Analyze with GEO2R

Select item 20008226414.

Shewanella piezotolerans WP3 wild-type strain under heat shock

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
18 Samples

Download data

Series

Accession:: GSE82264

ID:: 200082264

Select item 20008226315.

Shewanella piezotolerans WP3 wild-type strain heat shock for 90 min

(Submitter supplied) The WP3 strains was cultured at 20°C and heat shocked at 40°C for 90 min. The transcriptional profiles after and before heat shock were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GPR

Series

Accession:: GSE82263

ID:: 200082263

Analyze with GEO2R

Select item 20008226216.

Shewanella piezotolerans WP3 wild-type strain heat shock for 60 min

(Submitter supplied) The WP3 strains was cultured at 20°C and heat shocked at 40°C for 60 min. The transcriptional profiles after and before heat shock were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GPR

Series

Accession:: GSE82262

ID:: 200082262

Analyze with GEO2R

Select item 20008226117.

Shewanella piezotolerans WP3 wild-type strain heat shock for 30 min

(Submitter supplied) The WP3 strains was cultured at 20°C and heat shocked at 40°C for 30 min. The transcriptional profiles after and before heat shock were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: GPR

Series

Accession:: GSE82261

ID:: 200082261

Analyze with GEO2R

Select item 20004777318.

The regulatory role of ferric uptake regulator (Fur) during anaerobic respiration of Shewanella piezotolerans WP3

(Submitter supplied) Purpose: The goal is to study the regulatory role of ferric uptake regulator (Fur) during anaerobic respiration in Shewanella piezotolerans WP3

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17267
2 Samples

Download data: TXT

Series

Accession:: GSE47773

ID:: 200047773

SRA Run Selector

Select item 20006773219.

crpD2 mutant vs Shewanella piezotolerans WP3 wild-type strain

(Submitter supplied) The DNA binding domain of crp gene was deleted from WP3 genome to construct the WP3ΔcrpD2 strain. The two strains were cultured at 20°C and the transcriptional profiles were compared.

Organism:: Shewanella piezotolerans WP3

Type:: Expression profiling by array

Platform:: GPL16568
6 Samples

Download data: LSR

Series

Accession:: GSE67732

ID:: 200067732

Analyze with GEO2R

Select item 20006773120.

crpD1 mutant vs Shewanella piezotolerans WP3 wild-type strain

(Submitter supplied) The cAMP binding domain of crp gene was deleted from WP3 genome to construct the WP3ΔcrpD1 strain. The two strains were cultured at 20°C and the transcriptional profiles were compared.