txid122706[Organism:exp] - GEO DataSets - NCBI

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Select item 2000123231.

NaphS2 Gene Expression During Anaerobic Degradation of Naphthalene

(Submitter supplied) Degradation of polycyclic aromatic hydrocarbons (PAHs) such as naphthalene by anaerobic microorganisms is poorly understood. Strain NaphS2, an anaerobic sulfate reducing marine delta-proteobacterium is capable of using naphthalene and the aromatic compound benzoate, as well as pyruvate, as an electron donors in the presence of sulfate. In order to identify genes involved in the naphthalene degradation pathway, we compared gene expression in NaphS2 during growth on benzoate vs. more...

Organism:: delta proteobacterium NaphS2

Type:: Expression profiling by array

Platforms:: GPL5434 GPL5433
36 Samples

Download data: TXT

Series

Accession:: GSE12323

ID:: 200012323

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000054342.

Strain NaphS2 antisense-detecting 12K oligo array set 2

(Submitter supplied) each oligonucleotide is synthesized on an array of gold electrodes embedded in a silicon chip. Protocol: In-situ electrochemically synthesized oligonucleotide array. For reference see: Mauer et al., Electrochemically generated acid and its containment to 100 micron reaction areas for the production of DNA microarrays. PLoS ONE. 2006, Dec 20;1:e34.

Organism:: delta proteobacterium NaphS2

1 Series
18 Samples

Platform

Accession:: GPL5434

ID:: 100005434

Select item 1000054333.

Strain NaphS2 antisense-detecting 12K oligo array set 1

(Submitter supplied) each oligonucleotide is synthesized on an array of gold electrodes embedded in a silicon chip. Protocol: In-situ electrochemically synthesized oligonucleotide array. For reference see: Mauer et al., Electrochemically generated acid and its containment to 100 micron reaction areas for the production of DNA microarrays. PLoS ONE. 2006, Dec 20;1:e34.

Organism:: delta proteobacterium NaphS2

1 Series
18 Samples

Platform

Accession:: GPL5433

ID:: 100005433

Select item 3003096554.

naph_ben_set2_3B (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 grown with naphthalene as the electron donor (channel 1) NaphS2 grown with benzoate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM309655

ID:: 300309655

Select item 3003096545.

naph_ben_set2_3A (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 grown with naphthalene as the electron donor (channel 1) NaphS2 grown with pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM309654

ID:: 300309654

Select item 3003096536.

naph_ben_set2_2B (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 grown with naphthalene as the electron donor (channel 1) NaphS2 grown with pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM309653

ID:: 300309653

Select item 3003096527.

naph_ben_set2_2A (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 grown with naphthalene as the electron donor (channel 1) NaphS2 grown with benzoate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM309652

ID:: 300309652

Select item 3003096518.

naph_ben_set2_1B (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 grown with naphthalene as the electron donor (channel 1) NaphS2 grown with pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM309651

ID:: 300309651

Select item 3003096489.

naph_ben_set2_1A (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 grown with naphthalene as the electron donor (channel 1) NaphS2 grown with benzoate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM309648

ID:: 300309648

Select item 30030964710.

naph_pyr_set1_3B (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 was grown in batch culture using Naphthalene as the electron donor (channel 1) NaphS2 was grown in batch culture with pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM309647

ID:: 300309647

Select item 30030964511.

naph_pyr_set2_3A (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 was grown in batch culture using naphthalene as the electron donor (channel 1) NaphS2 was grown in batch culture with pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM309645

ID:: 300309645

Select item 30030964312.

naph_pyr_set2_2B (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 was grown in batch culture using naphthalene as the electron donor (channel 1) NaphS2 was grown in batch culture using pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM309643

ID:: 300309643

Select item 30030964113.

naph_pyr_set2_2A (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 was grown in batch culture using naphthalene as the electron donor (channel 1) NaphS2 was grown in batch culture using pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM309641

ID:: 300309641

Select item 30030963714.

naph_pyr_set2_1B (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 was grown in batch culture using naphthalene as the electron donor (channel 1) NaphS2 was grown in batch culture using pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM309637

ID:: 300309637

Select item 30029496815.

naph_pyr_set2_1A (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 was grown in batch culture using Naphthalene as the electron donor (channel 1) NaphS2 was grown in batch culture using Pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM294968

ID:: 300294968

Select item 30029496716.

ben_pyr_set2_3B (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 was grown in batch culture using benzoate as the electron donor (channel 1) NaphS2 was grown in batch culture using Pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM294967

ID:: 300294967

Select item 30029496617.

ben_pyr_set2_2B (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 was grown in batch culture using benzoate as the electron donor (channel 1) NaphS2 was grown in batch culture using Pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM294966

ID:: 300294966

Select item 30029496518.

ben_pyr_set2_1B (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 was grown in batch culture using benzoate as the electron donor (channel 1) NaphS2 was grown in batch culture using Pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM294965

ID:: 300294965

Select item 30029496419.

ben_pyr_set2_3A (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 was grown in batch culture using benzoate as the electron donor (channel 1) NaphS2 was grown in batch culture using Pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM294964

ID:: 300294964

Select item 30029496320.

ben_pyr_set2_2A (array set 2)

Organism:: delta proteobacterium NaphS2

Source name:: NaphS2 was grown in batch culture using benzoate as the electron donor (channel 1) NaphS2 was grown in batch culture using Pyruvate as the electron donor (channel 2)

Platform:: GPL5434
Series:: GSE12323

Download data: TXT

Sample

Accession:: GSM294963

ID:: 300294963

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