nsv3877365
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:248,886,400
- Description:GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 588163 SVs from 159 studies. See in: genome view
Overlapping variant regions from other studies: 586319 SVs from 159 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3877365 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 47,851 | 248,934,250 |
| nsv3877365 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 47,851 | 249,228,449 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15156967 | copy number gain | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000736295.2, VCV000599659.2 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15156967 | Remapped | Good | NC_000001.11:g.(?_ 47851)_(248934250_ ?)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 47,851 | 248,934,250 |
| nssv15156967 | Submitted genomic | NC_000001.10:g.(?_ 47851)_(249228449_ ?)dup | GRCh37 (hg19) | NC_000001.10 | Chr1 | 47,851 | 249,228,449 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15156967 | GRCh37: NC_000001.10:g.(?_47851)_(249228449_?)dup | copy number gain | unknown | not provided | Pathogenic | ClinVar | RCV000736295.2, VCV000599659.2 | 3 |