ClinVar Genomic variation as it relates to human health
NM_001387994.1(BAG6):c.6G>A (p.Glu2=)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_001387994.1(BAG6):c.6G>A (p.Glu2=)
Variation ID: 786083 Accession: VCV000786083.4
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 6p21.33 6: 31651758 (GRCh38) [ NCBI UCSC ] 6: 31619535 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Dec 17, 2019 May 4, 2020 Dec 31, 2019 - HGVS
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... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_001387994.1:c.6G>A MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_001374923.1:p.Glu2= synonymous NM_001098534.2:c.6G>A NP_001092004.1:p.Glu2= synonymous NM_001199697.2:c.6G>A NP_001186626.1:p.Glu2= synonymous NM_001199698.2:c.6G>A NP_001186627.1:p.Glu2= synonymous NM_001387940.1:c.6G>A NP_001374869.1:p.Glu2= synonymous NM_001387942.1:c.6G>A NP_001374871.1:p.Glu2= synonymous NM_001387943.1:c.6G>A NP_001374872.1:p.Glu2= synonymous NM_001387944.1:c.6G>A NP_001374873.1:p.Glu2= synonymous NM_001387946.1:c.6G>A NP_001374875.1:p.Glu2= synonymous NM_001387949.1:c.6G>A NP_001374878.1:p.Glu2= synonymous NM_001387951.1:c.6G>A NP_001374880.1:p.Glu2= synonymous NM_001387954.1:c.6G>A NP_001374883.1:p.Glu2= synonymous NM_001387955.1:c.6G>A NP_001374884.1:p.Glu2= synonymous NM_001387956.1:c.6G>A NP_001374885.1:p.Glu2= synonymous NM_001387958.1:c.6G>A NP_001374887.1:p.Glu2= synonymous NM_001387961.1:c.6G>A NP_001374890.1:p.Glu2= synonymous NM_001387963.1:c.6G>A NP_001374892.1:p.Glu2= synonymous NM_001387964.1:c.6G>A NP_001374893.1:p.Glu2= synonymous NM_001387965.1:c.6G>A NP_001374894.1:p.Glu2= synonymous NM_001387982.1:c.6G>A NP_001374911.1:p.Glu2= synonymous NM_001387983.1:c.6G>A NP_001374912.1:p.Glu2= synonymous NM_001387984.1:c.6G>A NP_001374913.1:p.Glu2= synonymous NM_001387985.1:c.6G>A NP_001374914.1:p.Glu2= synonymous NM_001387986.1:c.6G>A NP_001374915.1:p.Glu2= synonymous NM_001387987.1:c.6G>A NP_001374916.1:p.Glu2= synonymous NM_001387988.1:c.6G>A NP_001374917.1:p.Glu2= synonymous NM_001387989.1:c.6G>A NP_001374918.1:p.Glu2= synonymous NM_001387990.1:c.6G>A NP_001374919.1:p.Glu2= synonymous NM_001387991.1:c.6G>A NP_001374920.1:p.Glu2= synonymous NM_001387992.1:c.6G>A NP_001374921.1:p.Glu2= synonymous NM_001387993.1:c.6G>A NP_001374922.1:p.Glu2= synonymous NM_001387995.1:c.6G>A NP_001374924.1:p.Glu2= synonymous NM_001387996.1:c.6G>A NP_001374925.1:p.Glu2= synonymous NM_001387997.1:c.6G>A NP_001374926.1:p.Glu2= synonymous NM_001387998.1:c.6G>A NP_001374927.1:p.Glu2= synonymous NM_001387999.1:c.6G>A NP_001374928.1:p.Glu2= synonymous NM_001388000.1:c.6G>A NP_001374929.1:p.Glu2= synonymous NM_001388001.1:c.6G>A NP_001374930.1:p.Glu2= synonymous NM_001388002.1:c.6G>A NP_001374931.1:p.Glu2= synonymous NM_001388003.1:c.6G>A NP_001374932.1:p.Glu2= synonymous NM_001388004.1:c.6G>A NP_001374933.1:p.Glu2= synonymous NM_001388005.1:c.6G>A NP_001374934.1:p.Glu2= synonymous NM_001388006.1:c.6G>A NP_001374935.1:p.Glu2= synonymous NM_001388007.1:c.6G>A NP_001374936.1:p.Glu2= synonymous NM_001388008.1:c.6G>A NP_001374937.1:p.Glu2= synonymous NM_001388009.1:c.6G>A NP_001374938.1:p.Glu2= synonymous NM_001388010.1:c.6G>A NP_001374939.1:p.Glu2= synonymous NM_001388011.1:c.6G>A NP_001374940.1:p.Glu2= synonymous NM_001388012.1:c.6G>A NP_001374941.1:p.Glu2= synonymous NM_001388013.1:c.6G>A NP_001374942.1:p.Glu2= synonymous NM_001388014.1:c.6G>A NP_001374943.1:p.Glu2= synonymous NM_001388015.1:c.6G>A NP_001374944.1:p.Glu2= synonymous NM_001388016.1:c.6G>A NP_001374945.1:p.Glu2= synonymous NM_001388017.1:c.6G>A NP_001374946.1:p.Glu2= synonymous NM_001388018.1:c.6G>A NP_001374947.1:p.Glu2= synonymous NM_001388019.1:c.6G>A NP_001374948.1:p.Glu2= synonymous NM_001388020.1:c.6G>A NP_001374949.1:p.Glu2= synonymous NM_080702.3:c.6G>A NP_542433.1:p.Glu2= synonymous NM_080703.3:c.6G>A NP_542434.1:p.Glu2= synonymous NC_000006.12:g.31651758C>T NC_000006.11:g.31619535C>T - Protein change
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- Other names
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NM_004639.3:c.6G>A
- Canonical SPDI
- NC_000006.12:31651757:C:T
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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0.00599 (T)
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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1000 Genomes Project 0.00599
The Genome Aggregation Database (gnomAD) 0.00779
The Genome Aggregation Database (gnomAD), exomes 0.00164
Exome Aggregation Consortium (ExAC) 0.00201
Trans-Omics for Precision Medicine (TOPMed) 0.00808
1000 Genomes Project 30x 0.00687
NHLBI Exome Sequencing Project (ESP) Exome Variant Server 0.00972
- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
|---|---|---|---|---|---|---|
| HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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| BAG6 | - | - |
GRCh38 GRCh38 GRCh38 GRCh38 GRCh38 GRCh38 GRCh38 GRCh37 |
48 | 57 | |
Conditions - Germline
| Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
|---|---|---|---|---|
| Benign (1) |
criteria provided, single submitter
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Dec 31, 2019 | RCV000968084.5 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
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This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Benign
(Dec 31, 2019)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: unknown
Allele origin:
germline
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Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV001115516.2
First in ClinVar: Dec 17, 2019 Last updated: May 04, 2020 |
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Germline Functional Evidence
| There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
Help| There are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar. |
Text-mined citations for rs73728965 ...
HelpRecord last updated Sep 29, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.