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NM_000141.5(FGFR2):c.*197del AND Levy-Hollister syndrome

Germline classification:
Likely benign (1 submission)
Last evaluated:
Jun 14, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000334006.6

Allele description [Variation Report for NM_000141.5(FGFR2):c.*197del]

NM_000141.5(FGFR2):c.*197del

Gene:
FGFR2:fibroblast growth factor receptor 2 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
10q26.13
Genomic location:
Preferred name:
NM_000141.5(FGFR2):c.*197del
HGVS:
  • NC_000010.11:g.121479661del
  • NG_012449.2:g.123799del
  • NM_000141.5:c.*197delMANE SELECT
  • NM_001144914.1:c.*197del
  • NM_001144915.2:c.2045del
  • NM_001144916.2:c.*197del
  • NM_001144917.2:c.*197del
  • NM_001144918.2:c.*197del
  • NM_001320654.2:c.*197del
  • NM_001320658.2:c.*197del
  • NM_022969.1:c.*196delA
  • NM_022970.4:c.*196delA
  • NM_023029.2:c.*197del
  • NP_001138387.1:p.Lys682fs
  • LRG_994t1:c.*196del
  • LRG_994t2:c.*197del
  • LRG_994:g.123799del
  • NC_000010.10:g.123239175del
  • NM_000141.4:c.*196delA
  • NM_000141.4:c.*197delA
  • NM_022970.3:c.*197del
  • NR_073009.2:n.3099del
Protein change:
K682fs
Links:
dbSNP: rs748777325
NCBI 1000 Genomes Browser:
rs748777325
Molecular consequence:
  • NM_000141.5:c.*197del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001144914.1:c.*197del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001144916.2:c.*197del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001144917.2:c.*197del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001144918.2:c.*197del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001320654.2:c.*197del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001320658.2:c.*197del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_023029.2:c.*197del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001144915.2:c.2045del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NR_073009.2:n.3099del - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Levy-Hollister syndrome (LADD)
Synonyms:
LADD syndrome
Identifiers:
MONDO: MONDO:0007872; MedGen: C0265269; Orphanet: 2363; OMIM: PS149730

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000360799Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification 20161018)		Likely benign
(Jun 14, 2016) 		germlineclinical testing

ICSL_Variant_Classification_20161018.pdf

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Illumina Laboratory Services, Illumina, SCV000360799.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 12, 2024