Conserved Protein Domain Family
rpoC1

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CHL00018: rpoC1 
RNA polymerase beta' subunit
Statistics
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PSSM-Id: 214336
Aligned: 143 rows
Threshold Bit Score: 586.1
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
226968545  11 LPMTH--AIDYIQIQLASPKEISRWSQRMLPNNEIVGNITKADTINYRTFKPERDGLFCERIFGSIVNNECSCGKTRRRK 88 
118411018   2 VESTK--EFDYIKIKLASPFRILQWANRKLPNGQFVGEVQKSETINYRTFKPEMDGLFCERIFGPSKSLECACGKYKRVR 79 
12545457    1 -------MRDYVKINIASPKQILKWTERLTPKGKYIGKLKNSKKTLDKKGKCIRGGLFCEQIFGPTKKNTCRCGYYKNYK 73 
11467043    1 -------MKDYVRIKIASPQQVLSWTERSLPDGRLIGRLTNFDMLHFETKKPVFGGLLCERIFGSTKTNQCFCGKYKKMF 73 
124112109   1 MIPMKrvHFEYIQIHLASPERIRKWGERTLSNGEVVGEVTRSETINYRTLKPEMDGLFCERIFGPVKDWECHCGQYKRVR 80 
31442389   11 LNYLN--SNIGFKISIASPLIIIRWAWRKINNIIITGQISEPYTIDFKTGNPKLNGLFCERIFGPLISWQCKCGLFKNID 88 
11466381    1 MIPKKlvHFEYIQINLASPERILQWGQRTLSNGEIVGEVTRSETINYRTLKPEMDGLFCERIFGPVKDWECHCGRYKRVR 80 
299830352   2 IQSTK--EFSYIKIKLASPFRILQWANRKLPNGQFVGEVQKSETINYRTFKPEMDGLFCERIFGPSKSLECACGKYKRVR 79 
299830557   2 IQFAK--EFSYIKIKLASSFRILQWANRKLPNGQFVGEVQKSETINYRTFKPEMDGLFCERIFGPSKSLECACGKYKRVR 79 
118411128   2 IRSEK--EFDYIKIKLASPMRILQWSHRKLPNGQFVGEVQKSETINYRTFKPEMDGLFCERIFGPSKSLECACGKYKRVR 79 
226968545  89 smpiqiplsvsgsegsgtsqtAEESTGYV---CPTCGVEPTDAKVRRYRMGCIRLRKPVAHLWYFRNTPNVLSVLLNI-- 163
118411018  80 ------------------------YEGLI---CERCGVELTESRVRRHRMGYINLIYPVTHVWYINSRPNFMALLLEVee 132
12545457   74 ---------------------KSKKEKKHiklCRICNVEITDPIIRNYRMGYIELNIPIINILYLNINPCYLAIITNL-- 130
11467043   74 ---------------------QKGYANNFvlvCANCFVEINNCNRRRFRMGYIDLVFPLIHTWYLKSRPCYLAIMLGK-- 130
124112109  81 y-------------------nTDLKNDIV---CERCGVEVTESGVRRHRMGHIKLAAPVTHVWYLKGIPSYISIILGL-- 136
31442389   89 -------------------------PIKYtclCPLCGSENTTNQVRRYRIGYIYLYSPIVHIWYLYELLPYILNI----- 138
11466381   81 ynkn-------------------seisIV---CERCGVEVIESGVRRHRMGHIKLASPVTHVWYLKGIPSYISVILGM-- 136
299830352  80 ------------------------YEGLI---CERCGVELTESKVRRHRMGYINLIYPVTHVWYINSRPNFMALLLEIee 132
299830557  80 ------------------------YEGLI---CERCGVELTESRVRRHRMGYINLIYPVTHVWYINSRPNFMALLLEIee 132
118411128  80 ------------------------YEGLI---CERCGVELTESRVRRHRMGHINLIYPVTHVWYTNSRPNYIALLLEVeq 132
226968545 164 -----------------------------------------------SAVQT---------------------------- 168
118411018 133 fekkldttytthsenck------------kcdglklttstvvdlwdeRVKRIklasla---------------------- 178
12545457      --------------------------------------------------------------------------------    
11467043  131 -----------------------------------------------KVKNI---------------------------- 135
124112109 137 -----------------------------------------------PRKEV---------------------------- 141
31442389  139 -----------------------------------------------PINIL---------------------------- 143
11466381  137 -----------------------------------------------PRKDV---------------------------- 141
299830352 133 sekqlnttynlhsekcr------------kcnglklttstvvdlwdeRIKRIklasla---------------------- 178
299830557 133 sekqlnttynfhsekcq------------kckglklttstvvnlwdeRIKRIklasla---------------------- 178
118411128 133 cekrldtgwtefadlrdikekdnkdipeypsseiecrnylaspkailNCKEFlkekskakksnivnfyderikriklasl 212
226968545 169 ------DQLLHF---D-TYTPSSPNVMNYFLHGGTewfiegwdscHTM-FGQSSPNTVERFrddgftvededkdieavwn 237
118411018 179 -yfiaeDEISFY---GiHWDLQQYRRSRELGYTGYp--------lKPYpKPQNRRYSTPKY------------------- 227
12545457  131 ---------------KiNYLKQLHSGKAYITIKDK--------------------------------------------- 150
11467043  136 ------KKMCFM---D-----------SYIKIRNN--------------------------------------------- 150
124112109 142 ------EGIVYY---NnYETTGSKEIARFIKDKQL----------LER---KDRKIIDQSF------------------- 180
31442389  144 ------LFLIYY---KfLLENN----------KNI--------------------------------------------- 159
11466381  142 ------ENIVYYnnnDsISFKNISQ--------------------FLT-ENRFFSNSTDIL------------------- 175
299830352 179 -yfiaeDEISFY---GlHWDLQQYRRSRELGYSGYp--------lKPYpKPQNRRYNTPKY------------------- 227
299830557 179 -yfiaeDEISFY---GlHWDLQQYRRSRELGYSGYpl-------kPYP-KPQNRRYNTPKY------------------- 227
118411128 213 ayfiaeDEIAFY---GlHWDLQQYRRCRELGFTGYpl--------------kpHSKSRNRR------------------- 256
226968545 238 mdaWTQgehqhtkTGFPVDISTITN--CGAEAAHFLLSQLDLpfmermlstrlrqkVRLYTNKL---RKKQYLGKydded 312
118411018 228 ---LLR-------------ATPNFL--IGAPLIKRELEKLNLkseif----rmryfILVCTKVL---NKEKPIYD----- 277
12545457  151 -----------------NQKEKKL---TGGEAINDILSKIDLek-----------tlIKLTNNI---HQYKEKNIt---- 192
11467043  151 -------------------DGQTVGilTGAEAIYSRLSKIDL--------------ESLIEFLYkrlVGIEKLKE----- 192
124112109 181 ---FSL--------------DEESElfSGAQAIQTMLSSLDL--------------KTTAQNIR---EELAATEDws--- 223
31442389  160 -------------NNLKKITITQFI--FASNYIQYLLQRFNIl------------------NKI---LKIKSLLY----- 198
11466381  176 -------------DDLLNIKEKEEEi-SGGEAIYKMLKNFDL--------------KATAQKIR---EDLAENEAawtqs 224
299830352 228 ---LLR-------------TTPNFL--IGAPLIKRELEKLNLqseif----rtrcfVLVCTKVL---NKEKPLYN----- 277
299830557 228 ---LLR-------------ATPNFL--IGAPLIKRELEKLNLqseif----rtrcfVLVCTKVL---NKEKPLYN----- 277
118411128 257 ---RNT-------PKYLLRSTPNYL--IGAVLIKRELEKLNLd--------------QEIIKTR---NFIMLCSKvlhke 307
226968545 313 eekiiikvlkltrQG--Q--------RNRGLTGKIKKLAKRLHYVRLLARKELRPEWMVVTIFPVLPPDLRPMIQMSSGR 382
118411018 278 -------------ESrwf-----rkwEQQRIYKIREQAIKRIRILENLVGTGSSPAWMILTILPVIPPALRPMIQLEGGR 339
12545457  193 ------------------------------IKNFKNIL-NKIKLYNYLLQTKIKFSWLLFKYLPVLPPNVRPIINMKNNQ 241
11467043  193 -------------YN-----------FEKYLWLRKKF-INRIKLVNAFIQTNTKPIWIMIHFLPVLPPDIRPVVKLQDGT 247
124112109 224 ------------------------eeEEDRLRKKRNKLIKRLKIINHFLATGAKPEWMILSILPVLPPDLRPMVQLDGGQ 279
31442389  199 -------------TNt-----------NINLEKKKNFL-KPINLLNLCILNNIQPQWIMLDILPVLPSGLRPLIQLNNNN 253
11466381  225 sffngedsdwvldENqwNkknqdwqiEEERRNKKRNKLIKRLRIINHFIATGAKPEWMVLSILPVLPPELRPMVQLDGGR 304
299830352 278 -------------ESqwf-----rkwEQQRIYKIREQAIKRIRILENLIGTGSRPSWMILSILPVIPPALRPMIQLEGGR 339
299830557 278 -------------ESnwf-----rkwEQQRIYKIREQAIKRIRILENLIGTGSRPSWMILSILPVIPPALRPMIQLEGGR 339
118411128 308 -------------qpfyNfshwsrkwEYQRIYKLRDQSIKRIRILENLLTTGANPAWMIITILPVIPPALRPMIQLEGGR 374
226968545 383 FAASDLNDLYRRLIYRKIRFDKFCSLFDaqFLPDLLIRHDLCLLQEAADAIIDNGRL-DKPAQRPN-KSVFKSLTAIIEG 460
118411018 340 FATSDLNELYRRIITRNNRLLRLLEI----DAPQLIIRNEKRLLQEAVDTLIDNGKR-GKIALSAN-NRPLKSLSDIIKG 413
12545457  242 QISNDLNTLYASIINVNNKIIKLKES----LIPDNYFINEKILLQKKVDQLINNEKYkENKLGKIInNKKLKSITENIKG 317
11467043  248 VIMTDLNFLYIDIIYGNNKIIKLRKF----LLPEEFMLNEKRSLQVKVDAFINNENI-SENPYEQN-DKKLKSITEGLKG 321
124112109 280 FATSDLNDLYRRVINRNNRLSKLNTM----LAPEIVVRSEKRMLQEAVDALIDNGKR-GRQALVGSnKIPLKSLSDIIKG 354
31442389  254 FGSSSLNELYRIIIIINNKLKQWQLLRR--KFPISFEITAKRNLQQAIDILIEDNYK-NK-------KKNLISLSSHLQG 323
11466381  305 FATSDLNDLYRRVINRNNRLAKLNNM----LAPEIVVRSEKRMLQESVDALIDNGKR-GKALVGNN-KIPLKSLSDIIKG 378
299830352 340 FATSDLNELYRRIITRNNRLLRLLEI----DAPQLIIRNEKRLLQEAVDTLIDNGKR-GKIALSAN-NRPLKSLSDIIKG 413
299830557 340 FATSDLNELYRRIITRNNRLLRLLEI----DAPQLIIRNEKRLLQEAVDTLIDNGKR-GKIALSAN-NRPLKSLSDIIKG 413
118411128 375 FATSDLNELYRRIITRNNRLLRLLEI----DAPQLIIRNEKRMLQEAVDTLIDNGKR-GK-IALSAsNRPLKSLSDIIKG 448
226968545 461 KHGRFRQNLLGKRVDYSGRSVIVVGPKLRLHQCGLPREMALELFHPFIIQALLEHNVVRNIRAAKNMIQKRSQKVWDILE 540
118411018 414 KHGRFRQNLLGKRVDYSGRSVIVVGPSLRLNQCGLPYEMAIELFQPFIIRELINQGLASNMKIAKNLIQQNESIIDPVLE 493
12545457  318 KEGIIRENMLGKTVNFSGRSVIVVEPTLNLNECGLPKEMAINLFYPFIIKELIKLKLIKRL----YKIKKITKILDIILE 393
11467043  322 KKGRFRENLLGKTVDYSGRSVIVVEPKLLLHECGMPLDIALELFHPILIKMLIRFKFSVGIREAKRHIYNASNFVIPVLE 401
124112109 355 KQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKEMAIELFQPFVIHNLINQGLANNIKAAKRKLQNNDPSIWEVLK 434
31442389  324 KFNYFRQYILGKRIDFSGRSVIVSGPALIFNKIGISTNLSIELFKPIILNILKKNKYINTLLRASYFIEYSPIILKRLLK 403
11466381  379 KQGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLPKEMAIELFQPFVIHTLINEGLANNIKGAKKIIQNSDPILWEILN 458
299830352 414 KHGRFRQNLLGKRVDYSGRSVIVVGPSLKLNQCGLPYEMAIELFQPFVIRELINQGLANNMKIAKNLIQQNELIIEPVLE 493
299830557 414 KHGRFRQNLLGKRVDYSGRSVIVVGPSLKLNQCGLPYEMAIELFQPFVIRELINQGLANNMKIAKNLIQQNELIIEPVLE 493
118411128 449 KHGRFRQNLLGKRVDYSGRSVIVVGPSLKLNQCGLPYEMAIELFQPFIIRELINQGLASNMKVAKNLLQQNEPIINPVLE 528
226968545 541 RVVYAHPLLLNRAPTLHRLGIQAFEPILLSGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLEAQAEARLLMLATHNWLSP 620
118411018 494 KVLKSHPIFLNRAPTLHRLGIQAFEPILVQGRAIKLHPLVCSAFNADFDGDQMAVHIPLSLEAQAECYMLMLAPYNFLSP 573
12545457  394 NIIKNHYILLNRAPTLHRLNIQAFQPKLTIGKSIKLHPLVCSAFNADFDGDQMGVHIPLSLKAQAEARNILISINNCNSL 473
11467043  402 KVLNSYFILLNRAPTLHRLGIQSFQPKVTFEKAILLHPLVCSAFNADFDGDQMGIHIPLSLKSLAEARSMLISINNCVLP 481
124112109 435 QVIQGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLEAQTEARLLMLASSNLLSP 514
31442389  404 FIFNKEIIMFNRAPTLHRMNIQTFKPLLTENEIIKLFPLACSGFNADFDGDQMGIFLILSKSAKKEAKKNIIFDKNLFSP 483
11466381  459 QVIQGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLEAQTEARLLMLASSNLLSP 538
299830352 494 KILSNHPIFLNRAPTLHRLGIQAFEPILVQGRAIKLHPLVCSAFNADFDGDQMAVHVPLSLEAQAECYMLMLAPYNFLSP 573
299830557 494 KILANHPIFLNRAPTLHRLGIQAFEPILVQGRAIKLHPLVCSAFNADFDGDQMAVHVPLSLEAQAECYMLMLAPYNFLSP 573
118411128 529 KVLANHPIFLNRAPTLHRLGIQAFQPIIVQGRAIKLHPLVCSAFNADFDGDQMAVHVPLSLEAQAECYMLMLAPYNFLSP 608
226968545 621 ATGEPSIVPSQDMILGFYYLTAQRPALPLTQDmdtkrvptssVFKVFQSFERALQRYALGAIKLHDLVWVKAQy-pADVQ 699
118411018 574 ANGEPIIMPSQDMVLGCYYLTVNNINGLLG------------SSHYFANLADVILAYSQSKLEIHSAIWIRLE---Eqei 638
12545457  474 KNGDPNILPSQDIILGCYFSNIENCNLLYILN----------KIQIYTNMEKIKMEYKKENLSIHNFIWLNFK---NKQQ 540
11467043  482 ANGLPSILPSQDMVLGCYYVTLENCnldf----------iltNLKIYANIEKVKSAYHKGEILIQTFVWLICQkfpNILK 551
124112109 515 ATGQPIIAPSQDMILGCYYLTTENPKFQIE------------RGHYFSTLKDAVMAYEQKRIHLHSYIWVRFQg-----R 577
31442389  484 SSQKNIFKYSQNIILGLNTLLsfkg--------------snyKNLIFNNIDDILNAYSHSLLKINTIFLFK-----INFC 544
11466381  539 ATGLPIISPSQDMVLGCYYLTTEDIRlr------------gtKSHYFSSLEQVIMAYDQKKINLHTIVWVRFSgiiDSKY 606
299830352 574 ANGEPIIMPSQDMVLGCYYLTVNNINQLQG------------ANHYFSSLEDVILAYSQNKLEIHSSIWVRYS----DTT 637
299830557 574 ANGEPIIMPSQDMVLGCYYLTVNNIKNLHG------------SNHYFSSLDDVILAYSQNKIEIHSSIWVRYS----DKN 637
118411128 609 ANGEPIIMPSQDMVLGCYYLTVNNINGLLG------------SNHYFADLNDVILAYNQDQIEIHTSIWVRYK---HKIS 673
226968545 700 D-------PRPIEGRVHPTGQTTLIYDAGVTESwpkaplptqvslar--------------------------------- 739
118411018 639 ------neSILLKTTILDDETKIEFYENLQIRK----------------------------------------------- 665
12545457  541 I-------------------DKLKIKRKNLIKK----------------------------------------------- 554
11467043  552 N-------------------SKIRIKKKRMVKK----------------------------------------------- 565
124112109 578 Idtk-stqEEPIEIRIEESGFCSTIYRRYQYRSfknkkelktaatpfynsenaylmmnkkkmsipqkpslesnnlsltat 656
31442389  545 L----------------------YSYSTFTIYK----------------------------------------------- 555
11466381  607 Ik------QNPIEIRVDSLGFVSYIYKNYQMRK----------------------------------------------- 633
299830352 638 IkfsnpqkTIQLEDK-----TTIEYYNDWQIRR----------------------------------------------- 665
299830557 638 LeltkpdrIVILKDK-----TSIEYYKDVQVRK----------------------------------------------- 665
118411128 674 Kpsn-fikKIILNDK-----SYIEYYENIQIRK----------------------------------------------- 700
226968545 740 -------------tsstdpvfglvpqVHSGAWNTSYLRTTPGRLIFNSLIYENLF----L 782
118411018 666 --------------------------TKDNQLIVQYVQTTTGRAILNYIIQKTLNfl--- 696
12545457  555 ---------------------------------IIFLRTTVGRILFNDIIKNFL------ 575
11467043  566 ---------------------------------LVFFRTTIGRIFFDDMIKEFL------ 586
124112109 657 atatatatatatatatatatatatatNANDHYFVQYVRTTPGRILFNQVIHECLElneiH 716
31442389  556 ----------------------------------KYILTSLGRLLLQKLI---------- 571
11466381  634 --------------------------DFKNNLISQYIRTTPGRILFNQVIQNSLDyspse 667
299830352 666 --------------------------NQEGEILVQYLKTTTGRVILNYTIQKTLNfl--- 696
299830557 666 --------------------------NQDGEILVKYLKTTTGRVILNYTIQKTLNfl--- 696
118411128 701 --------------------------DENDQIIVQYLQTTTGRVLLNYIIQTTLNlkp-- 732
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