Conserved Protein Domain Family
recQ

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TIGR01389: recQ 
ATP-dependent DNA helicase RecQ
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273594
Aligned: 7 rows
Threshold Bit Score: 921.007
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_031337916   7 TQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVISPLIALMQDQVETLRQLGVRA 86  Xylella fastidiosa
BVECRQ        15 AKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAA 94  Escherichia coli
WP_010965975   5 IFNILKKYFGYSSFRRGQENIIQSILDGNDTFAIMPTGGGKSICYQVPALYMKGLTIVITPLISLMKDQVDTLRENGVNA 84  Clostridium ace...
WP_002356683   4 LQELLKDTFGYDDFRPGQETIIRHVLRQENVLGIMPTGGGKSICYQLPALLLDNLTLVISPLISLMKDQVDALNLMGIPA 83  Enterococcus fa...
WP_001566544   1 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQA 80  Staphylococcus ...
WP_010921294  13 ARDVLRRTFGHADFRGLQAGVIHELLTGHSAMAVLPTGGGKSLCYQIPSLIRPGLGLVISPLIALMADQVQGLRQAGVAA 92  Caulobacter vib...
WP_002245838   6 AKQILHEVFGYPEFRGRQESIVNALAGGRSLMVLMPTGGGKSLCYQIPALMREGVAVVVSPLIALMNDQVANLHVAGIEA 85  Neisseria menin...
WP_031337916  87 AYLNSTLDATQAQRIEHALVTADLDLLYIAPERLLTAHFLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERW 166 Xylella fastidiosa
BVECRQ        95 ACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF 174 Escherichia coli
WP_010965975  85 SYINSTLSSKETNDILMSALSGHLKILYVAPERLEQDYFRNAIKDLTISMVAIDEAHCVSQWGHDFRVSYKRIVPFINIF 164 Clostridium ace...
WP_002356683  84 TYINSTISYQEMNHRIQLAVNKEVKLLYVAPERLESYDFQQMLTHVPIDLLAVDEAHCISQWGHDFRPSYLRLAEIIDQF 163 Enterococcus fa...
WP_001566544  81 AFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTL 160 Staphylococcus ...
WP_010921294  93 ERLDSNISMDERSDIWRRIDAGEVDLLYLSPEGLMQPWMLDRLSRTPLALIAVDEAHCVSQWGHDFRPEYRMLGRLAELF 172 Caulobacter vib...
WP_002245838  86 AAVNSGTSADEAREIADKLAQGRLKLLYVAPERLVTDRFLRFLDQQTVSLFAIDEAHCVSQWGHDFRPEYQQLGMLAERY 165 Neisseria menin...
WP_031337916 167 PHVP-RIALTATADPPTQREIAERLDLSDAHHFISSFDRPNIRYTVVQKNNMRRQLQEFLGRHR-N-TAGIVYAMSRRKT 243 Xylella fastidiosa
BVECRQ       175 PTLP-FMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQR-G-KSGIIYCNSRAKV 251 Escherichia coli
WP_010965975 165 DKRPiVAAFTATATDEVKKDIINLLELKEPNCFITGFDRDNLFFSIVKNENKFDFITKYLSKHK-E-LSGIIYAATRKEV 242 Clostridium ace...
WP_002356683 164 QQQPtVIALTATATPQVAEDIVKQLRIPSENEIKTGFARENLSFQVVKDQNRDVFLLEYLKMNT-G-QSGIIYASTRKEV 241 Enterococcus fa...
WP_001566544 161 PQDFtIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHD-E-DAGIIYCSTRKQV 238 Staphylococcus ...
WP_010921294 173 PDAP-RLAVTATADARTRDDIRAELRLQGAAEFVDSFARPELALSAERKRGKGHDRVVELVLERpG-RSGVIYAGSRDGT 250 Caulobacter vib...
WP_002245838 166 PNVP-RIALTATADAATRADIKHYLHLDDAPEFVSSFDRPNIYYQVIEKNNGKKQLLDFIRKEM-TgQSGIVYCLSRKKV 243 Neisseria menin...
WP_031337916 244 EEIAAYLCTQGYNALPYHAGLPVETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGRAGR 323 Xylella fastidiosa
BVECRQ       252 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 331 Escherichia coli
WP_010965975 243 DSLHQKLISQGYSVGKYHAGMGDKERSESQDLFLYDETKLMIATNAFGMGIDKSNVRFVIHYNMPKNLESYYQEAGRAGR 322 Clostridium ace...
WP_002356683 242 ERIYHLLESKKIAAGMYHGGMSEQLRSENQEAFLYDQVQVMVATNAFGMGINKSNVRFVIHAQVPGNIESYYQEAGRAGR 321 Enterococcus fa...
WP_001566544 239 EELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGR 318 Staphylococcus ...
WP_010921294 251 EKLAERLNAEGVPALAYHAGLDKAVRARRLEDFLEADAAVMVATIAFGMGVDKPDVRYVIHADPPAAIEAYWQEVGRAGR 330 Caulobacter vib...
WP_002245838 244 EDVAQFLRENGLNAIPYHAGLSMDVREENQRRFTHEDNIIVVATVAFGMGIDKPDVRFVAHLDMPQSVEHFYQESGRAGR 323 Neisseria menin...
WP_031337916 324 DGEAAEAWMCYSLGDVVLLKQMIEQsEASEARKCVERAKLDHLLGYCESMQCRRQLLLSSFGET-Y-PNPCGNCDNCLTP 401 Xylella fastidiosa
BVECRQ       332 DGLPAEAMLFYDPADMAWLRRCLEE-KPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG-R-QEPCGNCDICLDP 408 Escherichia coli
WP_010965975 323 DGEKSECIILFSGQDIQIQKFLIKQsIPSFDRQRIELKKLNDMINYCMTTSCLRKYILNYFGENyE-VENCDNCINCTGN 401 Clostridium ace...
WP_002356683 322 DGLPSDAVLMFAPQDLQIQQYFIEQsEMTIDYKQKEYLKLREMSQYANAQMCLQKYILRYFGE--E-GTDCGRCSNCLDN 398 Enterococcus fa...
WP_001566544 319 DGLKSECILLFSERDINLHEYFITVsQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPN-EkLEECEQCSNCVQQ 397 Staphylococcus ...
WP_010921294 331 DGQPAEGITLYGSADMAWAARRIETrEAPDEVKQVQSRKLRQFYAMLEGVTCRAAAVRRYFGEE-G-VGHCGVCDICVSP 408 Caulobacter vib...
WP_002245838 324 DGLPAASWLCYGLNDWVLLRERIAEgNSDEVQKQIEMQKLDAMLAVCETAACRRVLLLKHFGEA-S--EPCGHCDNCLHP 400 Neisseria menin...
WP_031337916 402 ATAWDATVLSQKALSCVYRTGQRFGVGHLIDILRGSKSQRILQLGHDQLSTYGIGSDVDERSWRSVFRQLVATHLLEVDN 481 Xylella fastidiosa
BVECRQ       409 PKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNI 488 Escherichia coli
WP_010965975 402 VEIVDITLEAQKIISCIYRMGQNFGVTMIAEVLKGSKNSKVLRFNFDKLSTYGIMKDCTLKQITNLINTLIADGYLYLSD 481 Clostridium ace...
WP_002356683 399 RELVDITVDAQKVLSCVKRMGERFGKGLVGKVLTGSKDQKIDQWHFDRLPTYGLMKGRTQKEVTQLIDYLTAERYLIPSD 478 Enterococcus fa...
WP_001566544 398 DKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNEND 477 Staphylococcus ...
WP_010921294 409 PTGIDATQAAQKALSAVHRLGGRLGRGRVIEHLMGKTKDVTPQ--EAQLPTFGIGREFSQPTWRDLFDTLIFEGLLREDP 486 Caulobacter vib...
WP_002245838 401 PVRFDGTVLVQKLLSCVYRAGQRFAAGYITNILRGKSDDWIRGNRHEQLSTFGIGTELSDKEWRSVIRQCISLGYLTVNI 480 Neisseria menin...
WP_031337916 482 EG---YGGLRLTPSSRPVLKgERQVMMRRDQFIRE---------RDrTGQRHGLSVLPEDlALFNALHRLRAQLAKEQNV 549 Xylella fastidiosa
BVECRQ       489 AQ---HSALQLTEAARPVLA-ESSLQLAVPRIVAL---------KP-KAMQKSFGGNYDR-KLFAKLRKLRKSIADESNV 553 Escherichia coli
WP_010965975 482 ----------SEYATVKMSQkSIEVLKGYKKVVQK---------IH---IVEELSLSTDN-TLFEILKALRLEIARRENV 538 Clostridium ace...
WP_002356683 479 ----------GQFPLLSVSTeGVQVLLGERKVFRK---------ED----QKVRKVAVDD-ALFERLRELRMDMAQEAGV 534 Enterococcus fa...
WP_001566544 478 EI------LMCDTSIKKLLSnEVEVFTTPFKQKAT---------EK---VFINTVEGVDR-VLFSQLVEVRKKLSDKLTI 538 Staphylococcus ...
WP_010921294 487 NDgrpLIGLGDVEGVRQVYRnERKVALRQTTDAPDsggragggmRK-RREGRALTIPAENqLLFEALRSWRKEQAQLQHV 565 Caulobacter vib...
WP_002245838 481 TR---YQALQLTEAAKKVLKgETEVMLRPLKRDKP---------AArTLKDNWLRTEREE-RLWQALRVWRMKQAEAEGI 547 Neisseria menin...
WP_031337916 550 PAFVIFHDSTLRHIAEQRPTNLNALTKISGIGNNKLTRYGHQLIELVLAQ 599 Xylella fastidiosa
BVECRQ       554 PPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAH 603 Escherichia coli
WP_010965975 539 PPYIIFSDSVLSEMCKYYPKDKNSMLQIKGVGEIKYNKYGEIFEEKIREY 588 Clostridium acetobutylicum
WP_002356683 535 PPYVVFSDSTLKEMCEKLPQTTIQLLQIKGVGQNKLDKYGTAFLEVIKEY 584 Enterococcus faecalis
WP_001566544 539 APVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNY 588 Staphylococcus aureus
WP_010921294 566 PPYVIFHDATLAEIAAARPATLAALGKAGGVGQGKLDRYGEAVLKVVREN 615 Caulobacter vibrioides
WP_002245838 548 PAYMIFGDKTLRDLVEKMPQDLNGLHDIYGLGEAKIDRFGHGILEVCRNA 597 Neisseria meningitidis
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