Conserved Protein Domain Family
RecQ

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COG0514: RecQ (this model, PSSM-Id:223588 is obsolete and has been replaced by 440280)
Superfamily II DNA helicase RecQ [Replication, recombination and repair]
Statistics
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PSSM-Id: 223588
Aligned: 46 rows
Threshold Bit Score: 419.393
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
19115952 1116 EKDKTNeeknkdevkaemtqPVvnqdshdlqdqlattptaptafhyrpgllqpsqtsvqhccwaLSQYYGl-EAKFRSLK 1194 fission yeast
14601352  472 tlariirlfysgraglvsvqwgrivellhrlgavgvswaaglgeprsssatvaeevvddvlagvvnrllG--VSRLRPGQ 549  Aeropyrum pernix
19552119    4 TREEAN--------------NL------------------------------------------LAGIAGp-GAQLRDDQ 26   Corynebacterium g...
15833536    1 --------------------------------------------------------------------MG--RAGRGIDS 10   Escherichia coli ...
15833537      --------------------------------------------------------------------------------      Escherichia coli ...
15833538    2 EKHAAE--------------LL------------------------------------------LQRMLGntTATFREGQ 25   Escherichia coli ...
15639097   29 TDNPACdahmshdviartaqAVfgiralfpwqrlvianildaahacthttpfaaagssqtdatrVTHVDDaqPEDNFVGA 108  Treponema pallidum
15803946      --------------------------------------------------------------------------------      Escherichia coli ...
15803947    2 EKHAAE--------------LL------------------------------------------LQRMLGntTATFREGQ 25   Escherichia coli ...
17230943    5 NKEKAL--------------LL------------------------------------------LRQALDnpTSNFRPGQ 28   Nostoc sp. PCC 7120
19115952 1195 QfqSVYFSLLNR------MNLITVLPTGGGKSLSFLIPALIEkkrqtPGkvmnmVTLVLVPMMSLRQDMMLRVNEKGLLV 1268 fission yeast
14601352  550 E--AVLRRISRVyaslspSVTIAVMPTGYGKSLLFQAPARGLay-lgYGa----LTLVVTPLKALMRDQTRAALGRGLAA 622  Aeropyrum pernix
19552119   27 W--VAIDALVNQr-----KRMLVVQRTGWGKSAVYFIAAKLLra-rgAG-----AAVIISPLLALMRNQVASAERAGIKA 93   Corynebacterium g...
15833536   11 A--VGILLCGSE------DRAIHKFFRESAFPAEAQIHEILN-------------VLSVNDGLTLRGIEQRTNLRYG-QI 68   Escherichia coli ...
15833537      --------------------------------------------------------------------------------      Escherichia coli ...
15833538   26 W--EAIDAVVNQr-----RKLLVVQRTGWGKSAVYFIASKIFrd-rgAG-----PTIIISPLLALMRNQVAAAERLGITA 92   Escherichia coli ...
15639097  109 M--QDTRFDQDGvs---rAHQVVLLPTGAGKSLCFQVPALFL-----EG-----PTLVVYPLLSLMRDQCRRMQAVGFSV 173  Treponema pallidum
15803946      --------------------------------------------------------------------------------      Escherichia coli ...
15803947   26 W--EAIDAVVNQr-----RKLLVVQRTGWGKSAVYFIASKIFrd-rgAG-----PTIIISPLLALMRNQVAAAERLGITA 92   Escherichia coli ...
17230943   29 W--EAIEELIERr-----SRLLVVQRTGWGKSLVYFLATKLLrd-kgAG-----CTLLISPLLALMRNQIAAAQRIGIKA 95   Nostoc sp. PCC 7120
19115952 1269 CSGNWTAFKDVRLTLETQLPD----------------------------------------LFILTYESALTNSGl---- 1304 fission yeast
14601352  623 CYIDSSLSLKARGEVLRAAAMg--------------------------------------lIDLLYIAPERFEDA----- 659  Aeropyrum pernix
19552119   94 ATLNSA-NMTEWETIQQQVVSg--------------------------------------dADVLLISPERLNNP----- 129  Corynebacterium g...
15833536   69 EKALKLLVAENPSPVVYTEKLw--------------------------------------rRTIVSFSPDHERIN----- 105  Escherichia coli ...
15833537      --------------------------------------------------------------------------------      Escherichia coli ...
15833538   93 ETLNST-NREEWQRISDKLLQg--------------------------------------eVDCLLVSPERLANQ----- 128  Escherichia coli ...
15639097  174 ILLRGGLNAQERAYMYAQLDRcaeaygrmrgvtppahqtaefsladsisfdaslfsddvstFSKVVHVDERLAQKrtesr 253  Treponema pallidum
15803946      --------------------------------------------------------------------------------      Escherichia coli ...
15803947   93 ETLNST-NREEWQRISDKLLQg--------------------------------------eVDCLLVSPERLANQ----- 128  Escherichia coli ...
17230943   96 ATINSS-NQDEWRAVKTQLLAg--------------------------------------qVDILLISPERLANN----- 131  Nostoc sp. PCC 7120
19115952 1305 -----------RFFESLAt---LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLY------APLHLLSATFPRQLEM 1363 fission yeast
14601352  660 -----------RIREVVE----GGRLALAVLDEAHTASRWGeTFRNSYLYMAKTLASLrleegwPPILALTATATLDIIE 724  Aeropyrum pernix
19552119  130 -----------DFRDTILpr-lAAETGLVVVDEAHCISDWGhDFRPDYRRIRDLLAGLap---nIPVLATTATANDRVVE 194  Corynebacterium g...
15833536  106 -----------HLMNQRKs---ELADVESYITTKECKMQF---LRRALDEPGAEHCG--------KCSSC--LQHPLLSP 158  Escherichia coli ...
15833537    1 ---------------------------------------MGpRFSPGLPTYIRYFAQLpa---nTPVLGTTATANNRVVE 38   Escherichia coli ...
15833538  129 -----------DFIETVLyp-iADHIGLLVVDEAHCISDWGhDFRPDYRRILDILRNYl----rIPLFWVQPRQRITVSL 192  Escherichia coli ...
15639097  254 rgvciiaspeiLTQPALRarvrACRVAHLVIDEAHCVSEWGdSFRPDYVRLGELVQDLa----pQVVTAFTATASQTVLA 329  Treponema pallidum
15803946      --------------------------------------------------------------------------------      Escherichia coli ...
15803947  129 -----------DFIETVLyp-iADHIGLLVVDEAHCISDWGhDFRPDYRRILDILRNYl----rIPLFWVQPRQRITVSL 192  Escherichia coli ...
17230943  132 -----------DFRENILlp-iSQSIGLFVVDEAHCISDWGhDFRPDYRRIVRILQGLpk---nIPILATTATANNRVID 196  Nostoc sp. PCC 7120
19115952 1364 VARQTFCTNFY--------------------VLRETSTARENIFYFLHPYDntEFLLDLR------------TLMKrtKV 1411 fission yeast
14601352  725 SLVAMLGAADYsvvdleedgaipgegspeetIVYRIAPVRPNIAVEARIAPpgRARLDVAaehvrelaawatGVSEswVG 804  Aeropyrum pernix
19552119  195 DVRAQLGDGTG---------------------LLRGGLDRESLYLSVVNLL--NPTERPA------------WLAT--HL 237  Corynebacterium g...
15833536  159 DIDSGLLHAA---------------------NLFIKHADLSLNLNKQVAAG---AFTQYG------------FKGN---L 199  Escherichia coli ...
15833537   39 DIRQQLGDIV----------------------IQRGTLARESLALDALVLG--EHSSRLA------------WLAT--VI 80   Escherichia coli ...
15833538  193 RISVSNWVTL---------------------------------------------------------------------- 202  Escherichia coli ...
15639097  330 RIMEVLFGGRa--------------------HVLQGTVDRPNIRYTVRTVLckQTALTQLv------------------- 370  Treponema pallidum
15803946    1 ---------M----------------------IQRGTLARESLALDALVLG--EHSSRLA------------WLAT--VI 33   Escherichia coli ...
15803947  193 RISVSNWVTL---------------------------------------------------------------------- 202  Escherichia coli ...
17230943  197 DIIAQLGANLQ---------------------VVRGNLTRESLRLQNISLP--SPAARMA------------WLVE--QL 239  Nostoc sp. PCC 7120
19115952 1412 FEGDGRAIIFCRTKKDVEYIHRRLHQSdlfaHTHVTIYTGD-------VSDEERQMNFDAFRnaNGKTRIMIATKAFGLG 1484 fission yeast
14601352  805 AVFTGFVKSKAMDWANAETIASRLEPAl--gGVCEVLVYHGq-----mGEKRRKMVEERAAE--PRGRKIIVATKAFGMG 875  Aeropyrum pernix
19552119  238 KELTGSGIIYCLTVSAAHDLADALNSV----GWNVAAYTGr-------TEAGERERLEHALI--NNEIKALVATSALGMG 304  Corynebacterium g...
15833536  200 PASLQGSTGRILSRWGYSGWGKQVAQE-----KKTGRFSDE-------LVEACAEMVRQRWN--PHPEPTWVCCV----- 260  Escherichia coli ...
15833537   81 PQFSKSGIVYTLTTRDAELVAEWLRKN----GISAFAYYSGvtcegaeDSNTAREYLEQALL--ANKIKVLVATTALGMG 154  Escherichia coli ...
15833538      --------------------------------------------------------------------------------      Escherichia coli ...
15639097  371 ARCVRPAVIFCARRVQVERVAHHLRTCl--sDTQIRFYHAG-------LQREEKETVERWFH--THDSAVLVTTCAWGMG 439  Treponema pallidum
15803946   34 PQFSKSGIVYTLTTRDAELVAEWLRKN----GISAFAYYSGvtcegaeDSNTAREYLEQALL--ANKIKVLVATTALGMG 107  Escherichia coli ...
15803947      --------------------------------------------------------------------------------      Escherichia coli ...
17230943  240 PQLPGSGIIYTLTVRDANRVANWLQTQ----GINAKSYHSd-------LESDIRITLEDELL--NNQIKALVATTALGMG 306  Nostoc sp. PCC 7120
19115952 1485 INYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYVEDSMKNfln---dnTMCVRSFLASEMDG 1561 fission yeast
14601352  876 VDIRNLRWTLHLFPSDSVEDLVQEIGRAGRDGLPARSLVLFDPEDFRVRRAMGLRQLPrlssvlalYNSLVELHGREESY 955  Aeropyrum pernix
19552119  305 FDKPDLGFVVHMGSPSSPVSYYQQIGRAGRGTARADVILLPGTEDKEIWEYFASVSFPreevvrqlLAVLTDEAQSTVK- 383  Corynebacterium g...
15833536  261 ---P-S--LKHLDLVPDFESTSTWFLILPGDWRRNLAYLLLMPLKKSWTIHRRKCSKT--------VSTSVKISTGRL-- 324  Escherichia coli ...
15833537  155 FDKPDLGFVIHYQMPGSIVGYY---------------------------------------------------------- 176  Escherichia coli ...
15833538      --------------------------------------------------------------------------------      Escherichia coli ...
15639097  440 VDKPNVRTVIHVDAPLTVEAYVQEVGRAGRDGMRADAFLLWSPRDAR-SIETLPHA---------------QR--VRAHV 501  Treponema pallidum
15803946  108 FDKPDLGFVIHYQMPGSIVGYY---------------------------------------------------------- 129  Escherichia coli ...
15803947      --------------------------------------------------------------------------------      Escherichia coli ...
17230943  307 FDKPDLGFVIHYQRPGSVVHYYQQVGRAGRAVDIAYGILLSGDEDEEITNYFINTAFPpqihtqqvLNILNQEEGLSVPQ 386  Nostoc sp. PCC 7120
19115952 1562 ECVCCASFAnCVYCSrcSDSLLGEEsTVSTMYGvKPTLPETPKp--AIATHSRYNASFSSSPPPQPG----NSSGMSAMN 1635 fission yeast
14601352  956 TLVLTPPAVpPKVVR--LLDILRTSgLLDYSITrRLHLYRLRKgvsWRDLEEAGVTPRLVLPRLGIVgfeeKVPPGEMLE 1033 Aeropyrum pernix
19552119  384 LESQVDLSR-SRLEQ--VLKVLDVDg--AVKRV-RGGWVSTGQ---EWIYDAERYAGLEQARKIEQQ----SMVNYQNTT 450  Corynebacterium g...
15833536      --------------------------------------------------------------------------------      Escherichia coli ...
15833537      --------------------------------------------------------------------------------      Escherichia coli ...
15833538      --------------------------------------------------------------------------------      Escherichia coli ...
15639097  502 LRHFAESGR-CRRAV--LLESLGEQ---NVCAG-CDVCAGTARf-vCEDVEALLQFLKKNARRFTVS----SLVQHLALH 569  Treponema pallidum
15803946      --------------------------------------------------------------------------------      Escherichia coli ...
15803947      --------------------------------------------------------------------------------      Escherichia coli ...
17230943  387 LEQKLNLSR-GQIDK--VLKLLSLEsPSPVTKI-DSKWYVTAI---NYQYDEQKIANLTAIRRQEQA----TMSAYMQSQ 455  Nostoc sp. PCC 7120
19115952 1636 TNTTSTTPVSLSELSEITLFPSSVSPTWKKSFGNANTNLKYGLEDMSLSHrr----gHKRTYDEHLNN-----VQQGVNH 1706 fission yeast
14601352 1034 PASLSIKLCISPDNSFEIFYGRHGNTGRECRRAVIERSGVALLIDLNPDVrhrsitkPTPDLLVYHARlasleALKVERL 1113 Aeropyrum pernix
19552119  451 ECRMLYLRKELDDVEATTPCGRCDNCTGKTWG-LDTDASITLKVDQQLQT-------PGVKIAPRKMW-----PTGISVR 517  Corynebacterium g...
15833536      --------------------------------------------------------------------------------      Escherichia coli ...
15833537      --------------------------------------------------------------------------------      Escherichia coli ...
15833538      --------------------------------------------------------------------------------      Escherichia coli ...
15639097  570 QKVLSVADVRALLYYALETGRVKKKHSLLWGDVLYVAR------------------------------------------ 607  Treponema pallidum
15803946      --------------------------------------------------------------------------------      Escherichia coli ...
15803947      --------------------------------------------------------------------------------      Escherichia coli ...
17230943  456 QCLMAFLATELDDANPQN-CGKCAVCVGRPLLPVNCSIEMLNQAVLYLRR-------SQQIIEPRKQW-----PSQALLS 522  Nostoc sp. PCC 7120
19115952 1707 DMNRVhgs---vgGMSGIVGIGIgigdgd-------------------------------gdgdvdSRtih--------- 1743 fission yeast
14601352 1114 RKLLEslsglrgeKSSQAFREGVreyfnkpllrplpenpekalkqprsiecagvskcralaatlerLVevlgplgvtiav 1193 Aeropyrum pernix
19552119  518 GKIAGl-------EEGRALGRLNdiargpalk--------------------------alldsgaySDd----------- 553  Corynebacterium g...
15833536      --------------------------------------------------------------------------------      Escherichia coli ...
15833537      --------------------------------------------------------------------------------      Escherichia coli ...
15833538      --------------------------------------------------------------------------------      Escherichia coli ...
15639097      --------------------------------------------------------------------------------      Treponema pallidum
15803946      --------------------------------------------------------------------------------      Escherichia coli ...
15803947      --------------------------------------------------------------------------------      Escherichia coli ...
17230943  523 YKFSGnisnnlraQEGRALSLWGdagwgelvk--------------------------qgkyrdnyFNd----------- 565  Nostoc sp. PCC 7120
19115952 1744 ----faeYKSRVQAVKKQWVDSTDISAQLERFFRVYKDECLSCTLGNPDTEIRAHTGK--ACPVRLSTCYKCGKADHNLR 1817 fission yeast
14601352 1194 psgearaSFLRAYSSLFPVEPRIVGVRKVLNRLKAGGVAAADLGYVVAVTHKESQYNMllSTVEGSGYPYVTVVHAKMPV 1273 Aeropyrum pernix
19552119  554 -------PWMARIIEVLKNWDWTNRPANVVALGNTNFGSTEMIIQVAQSIAAVGRMNF--AGVLPAAPGAEEVMAQNSAY 624  Corynebacterium g...
15833536      --------------------------------------------------------------------------------      Escherichia coli ...
15833537      --------------------------------------------------------------------------------      Escherichia coli ...
15833538      --------------------------------------------------------------------------------      Escherichia coli ...
15639097      --------------------------------------------------------------------------------      Treponema pallidum
15803946      --------------------------------------------------------------------------------      Escherichia coli ...
15803947      --------------------------------------------------------------------------------      Escherichia coli ...
17230943  566 -------VLVQGTVEMIKRWQPQPFPSWVTCVP--SLNRPELVPNFAQRLAEKLGITF--VPIVRKVKQTQLQKDMSNSY 634  Nostoc sp. PCC 7120
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