Conserved Protein Domain Family
RpiR

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COG1737: RpiR (this model, PSSM-Id:224651 is obsolete and has been replaced by 441343)
DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains [Transcription]
Statistics
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PSSM-Id: 224651
Aligned: 97 rows
Threshold Bit Score: 96.2114
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15889426  70 TTATVSDVIHAHYDALTR--SEKRLAESLLGNYPVSGLGSITTIAENAGVSTPTVARMVQKLGYKGYPEFQAHLHQELEA 147 Agrobacterium tumef...
15890529   1 MVEKLLLNLTRAMKAGTP--SERKIAKYLIEHLDELPFETAQTLAAKLSLSPMTVGRFLRSLGYRQFSDIRADLRHAEET 78  Agrobacterium tumef...
15615502   2 LNSDVYKRIMDLQEKMSK--SQKKIANYLIQHPDTAPFLTASKLAKYAAVGEATVIRFAVFLGYEGYPDLQRHLQEALQK 79  Bacillus halodurans
15895125   4 EKYDLMRIIQIKFPRLSK--GQKLIAEYILKHYDKAAFMTAARLGVSVGVSESTVVRFANELGFSGYPKLQKALHELIKN 81  Clostridium acetobu...
19552672   7 TDAPPSIRITTLAPSLQP--NQRKVAEVMLVDAPSIVELTAQGLADRVGVGRATVIRTAQSLGYDGFPQLRVALAQELAL 84  Corynebacterium glu...
15833166   8 RVDIYGERFRTRASQLTP--GLRAVASYINEHREVVLDQTAMEIAATLNTSDATVIRAIQALGFAGLRDLKRTLEQWLGP 85  Escherichia coli O1...
17546096  18 ADASISERIAAALATLTP--AHQRMAEYVLANPFRAATMRIDEFAEAVGMSVATANRFAHALGFDGYPRFRAELVRGFEA 95  Ralstonia solanacearum
17546460  31 GLRELALRIGRDEADVSLggKAHTVLAKLIERPEEVAVRTITDLAASLGINASTLTRLATRLGYAGFADFQNVFRDTMAQ 110 Ralstonia solanacearum
16264014   2 DKGPLSDAIITAFDGLSS--QLRTAARYIVDHPRDVALLSMREQARQAGVQPATMTRLAKQLGFDGYDAIRERYAEALRE 79  Sinorhizobium meliloti
13475004   2 TVGEIQALILEMLPDMPR--QLALAARHIADHPDQVLVHSMRDLASRASVSPATLLRLTQTLKFDGWAEFRAVYARQLLS 79  Mesorhizobium loti
15889426 148 Tisg--pvaKHDRWA-----------TNAPGLH-ILNRFADAITGNLRDTLGDLDTAVFDNAARLLSDRKRSIYFVgGRI 213 Agrobacterium tumef...
15890529  79 Vg-------ADQPVTa----------EGGERHSnPFSQLLSQQIQAIQTAFDMTTQTIWRLAMNEITSADDVCLAT-SPE 140 Agrobacterium tumef...
15615502  80 Kmt-----sAEVFARt---------tDREDRPShAIEEILTDDMANLRATLQQIELEEFEQAVNSIIEAKRIYVIA-YRS 144 Bacillus halodurans
15895125  82 ---------KLTTVQrie------lsNTFIAEEsSLKGVLKADIENIRVTLEKINHNVFDDVVNSIFSAKRIYIIG-LRS 145 Clostridium acetobu...
19552672  85 Aqg-----aSRSMVEg----------ALSSSLLgHLQAGISDFQASLGTVASALTEDDLTRCIEGLDSARRVLVAS-HGL 148 Corynebacterium glu...
15833166  86 Alss--sekMSTTVS-----------NLTSDVNtAIDFVLEGHLYTCNVLSEPENRHALAQAVALLVQAR-QVAIFgIGA 151 Escherichia coli O1...
17546096  96 Tl------aPVEKLRhe--------lARPASSAeIFAASLNEDIGNLEATRRMLDPAACERAVEAILAAPRIYVVG-FGA 160 Ralstonia solanacearum
17546460 111 RhrhfysqqAERLVAgkktrarghqaGSAAPEVeTVARLARESIGNIERCLTQLSPTALREAAHLLASARRVRIHG-LRQ 189 Ralstonia solanacearum
16264014  80 GdagfagkaGEQARS-----------QKLRGDHaLAADMLRTIGTQISRLAEPAALDRIVAAATRLARARRVYCLG-LRS 147 Sinorhizobium meliloti
13475004  80 Apd-----aYAERASr---------aLDRSGLPaLLHESFAAQRANLDHAAGVNSPEALARSAAILAEADRVFISA-FMS 144 Mesorhizobium loti
15889426 214 TGAIAEYFFTHMQVIRPKTTLMSSNSSAWp-Q-YMLNMSAGDVLVIFDIRRYEHDMTTLAEVAKANG-VQIILFTDQWTS 290 Agrobacterium tumef...
15890529 141 GLDAGRHFYGRLLECRGHIHYLGSDNAAYv---ALWDYDPARTLLVIMDCGGNLLPLQRLSTTARKGgYRTLLITTRFYE 217 Agrobacterium tumef...
15615502 145 AASLGQFLTFYLDLVLQNTELVEQADGVSe---HLLDITEDDLVIGFGFARYTKRTVDVLKYVKQRG-AKTIVITDHALS 220 Bacillus halodurans
15895125 146 STALAEFLGFYLNLILDNVYVVSYKISDI--FeQIINITSDDLLIGIGFPRYASRTIEALSFAKSRK-TKVVALTDSLLS 222 Clostridium acetobu...
19552672 149 SAPLGLDFSQRLNSMGRSAEVHSDSMSEQi---VARQLGEGSVCFAISGSGASKATLATIEAARAGG-ATIMAMTCFAHS 224 Corynebacterium glu...
15833166 152 SGILADYTARLFNRIGLPATALNRTGIGLa-E-QLIALQRGDVLIMMAQKSAHREGLTTLREARRLG-IPVILLTNALDS 228 Escherichia coli O1...
17546096 161 SGYLAGLLRHGLDLYCDTVLSVSQAGGASdaArQLRKIAPDDLLIAIAFPRYAADTITLAKRVRDHG-GRVLALTDGPAS 239 Ralstonia solanacearum
17546460 190 FSALASFLCYGLGMIRADVALLDTQGLGVaeG--LAQLQPGDVMVVTSVAPYTRSVAAAAAAAKQAG-LSVIALTDTLAS 266 Ralstonia solanacearum
16264014 148 SHAVAWQFHYILSLVGEKSVMLDGIGGTG--AdAVGRATSADVLLVASVLPYTRATIEIAEYARDNG-VPVVAVTDSEVA 224 Sinorhizobium meliloti
13475004 145 CRGPGLTFAYLCRLLRDNVFLLGGEGSPL--AaDLALLRPEDAVLTINFQPYGREIDGVARAVGEGG-AKLVCLSDSRAT 221 Mesorhizobium loti
15889426 291 PVARHALHTFRVRIEAPSAWD---------------S-SV-VTLFVVEALIEAVQNGTWDETKERMNALEGLFEQTRL 351 Agrobacterium tumefac...
15890529 218 WGPESVDLCLAMPQSQNGGQG------------------LlQLVSLLEFTLCALSAGADDAGKARVKNLAALKRSLRS 277 Agrobacterium tumefac...
15615502 221 PLVPYGDRVLLAATEINSFID-----------------SFaAPHSIVSAFITAVTRSEHEKVQNRLQQLEELWASFNV 281 Bacillus halodurans
15895125 223 PLATEADYTLIAQSNMASFVD-----------------SLvAPLSVINALIVSVGLREKDRISNVFTDLENIWKRYKV 283 Clostridium acetobuty...
19552672 225 AIDVAADVSLIVPPMTASFQDel------------tRtSRaALMLVSEQLIELLITHRGQAAAQARATSMSMIGTSLE 290 Corynebacterium gluta...
15833166 229 RFSKDASIVIHVPRGDEKGKT---------------P-LHgTVLLCLEMIVWSVASAVPQRAVKTIKRINDFHRGLKT 290 Escherichia coli O157:H7
17546096 240 PLAPLADIALYARTERQFSASsdsatvaliealcgaVaHRsARSLESAANLTAFVLPWLHAGQAPRATPAAPADTARV 317 Ralstonia solanacearum
17546460 267 PLVPPADHAFLIAHESSFFSN-----------------SMgAYLVFCEGLLNLVATQLGKRSLQALERRERLITALDI 327 Ralstonia solanacearum
16264014 225 PLAQIAEAIIVVPTESPSFLH-----------------AMaPAFAVAEVLGALIAGRGGEATLAALERFDGQLAALNT 285 Sinorhizobium meliloti
13475004 222 QVTRVAREVLIFPVEGPSFFP-----------------SLtAAHALVECLAIAVLTHLGDSATRRIRLIEDAYYASGT 282 Mesorhizobium loti
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