Conserved Protein Domain Family
sam_11

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TIGR04053: sam_11 
radical SAM protein, BA_1875 family
Members of this subfamily of the radical SAM domain superfamily show closer sequence relationships to peptide-modifying proteins of bacteriocin and PQQ biosynthesis than to other characterized radical SAM proteins. Within this subfamily, targets are likely to be diverse. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 274945
Aligned: 20 rows
Threshold Bit Score: 564.604
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_010866511   6 PYEEKPLIVFWESTKACLLACKHCRAEALTEPQPGELSTREALALVDQVVEFGRPYPILVITGGDPLMRRDFWRILEYAV 85  Aeropyrum pernix
WP_011821230  17 PFERNPLLVFWETTKACMLACKHCRASAILKSLPGELTTEEAYKLIDDVAAFGQPYPILVLTGGDPLLRSDIWDIIAYAK 96  Hyperthermus bu...
WP_011007355  10 RFHEAPLLVFWESTKACPLACKHCRADAILKPLPGELTTQEGKRLIEQVAEFGDPKPLLIITGGDPLMRSDLFELIDYAN 89  Pyrobaculum aer...
WP_012186936   4 DYSQRPLLVFWETTKACPLSCRHCRANAILKPLPGELSTDEGKRLIEQLPEFGKPTPVLILTGGDPLMREDIFELIDYAK 83  Caldivirga maqu...
WP_010901054   4 DFNSKPLLIFWETTKACGLKCEHCRASAILDALPGEMTFDQSINFLSHIKEFGKPYPIVILTGGDMLRKHRIWDIMDYLR 83  Thermoplasma ac...
WP_012309417   2 DFEERPLLIFWELTKACKLKCKHCRAEAISEPLEDELKGEEALKLIEDIEEFGDPLPILILTGGDPLMRRDLREIVSYAK 81  Candidatus Kora...
WP_011955703  17 NFALTPLNIYWEMTQACALACRHCRAEAMPHPHPLQLSFEESVRFLRQIPDFGDPMPQLILTGGDPLARPDLLDLIDAAR 96  Roseiflexus sp....
WP_011224832   6 DLGEQPLVLIWEVTQACELACKHCRADAQPRRHPDELSTAEGKALLDQASEFGDG-QLVVLSGGDPLARGDLPELVEYGT 84  Haloarcula mari...
WP_011322498  14 DTSQRPFVLIWEVTQACELACDHCRADAKPSRHPDELTTAEGKRLLDSAAEFGDG-QLVVLSGGDPMKRDDLVELVRYGT 92  Natronomonas ph...
WP_010902856   5 DTSERPVVLVWEVTQACALACDHCRASARPQRHPSELSTAEGKQLLTDAAAFGDG-QLVVLSGGDPLARPDTVELVEHGT 83  Halobacterium s...
WP_010866511  86 SQGLRVAVAPSVTPLLTRE-VVRRMARMGVARISISIDSGLPEVHDAIRGVPGTFKASVNIVREALAAGLPVQINTTVMK 164 Aeropyrum pernix
WP_011821230  97 GKGLRLAVAPAVSPNLTED-KVKKLAELGVDGVSISLDGSRPEIHDGIRGTSGVFEKTLWAIKTFQEYGVRVQVNTAVMR 175 Hyperthermus bu...
WP_011007355  90 SLSVPVSLAPAVSPNLNTE-TLKLIKESGVKSISISLDGARPETHDEIRGVPGSYKETVNAIKTAVELGVSVQVNTVVWR 168 Pyrobaculum aer...
WP_012186936  84 SLNVPVAVSPTVSEKLLSDnVIDELRR--VSSVSVSLDGASPTTHEYIRNRNGVFELTLKAISSLLKAGVKVQVNTTFMK 161 Caldivirga maqu...
WP_010901054  84 SQEIPFSVSPAVTDLLTHE-AILKFKEFGVSSVSISLDG-MREVHEKVRGVAGVYDDTVKAIEDLISTGISMQINTVVMR 161 Thermoplasma ac...
WP_012309417  82 RKGIRMGIAPAVTD-LISD-KIDLIDEIG--SVSISLDG-IGEKHDLIRGDPGNFSRTLDYLKMLLRRGIKVQVNTLVAK 156 Candidatus Kora...
WP_011955703  97 ALGVPVSITPSATPNLTRT-MLAALKAHGVEALGLSLDGSNAARHDAIRGVGGTFDRTIEAMEWAAELDMPLQINTLVAA 175 Roseiflexus sp....
WP_011224832  85 EQGLRMTLTPSGTNSITPE-RLAELDDAGLRRLALSIDGGDSDAHDTFRGESGSFEATMAAAEAARNLDIPLQINTTVCA 163 Haloarcula mari...
WP_011322498  93 KQGLRMTLTPSGTEALTPD-NIAALVDAGLQRMALSVDAP-ATAHDRFRGEAGSFERTREAAEAARDAGIPLQTNTTVCA 170 Natronomonas ph...
WP_010902856  84 DCGLRMTVTPSGTASLTPT-AIEALADAGVAQFAVSIDGATPTTHDEFRGEAGSFERTLRAARAIRELGVPLQVNTTVCA 162 Halobacterium s...
WP_010866511 165 PTVDSLPETLKLLLDLGVDVWEVFYVVPTGRAARILDLTPSEWEDVSNYLYDAS-RYGvlVRTVEGPMFRRIALTRRLLE 243 Aeropyrum pernix
WP_011821230 176 DNVHDLADIAALLLKLGVKVWEVFYLVPVGRAQLELNLTPEEWEDVSHFLYEAS-KYGlvVRTSEGPMFRRVAITRMLLE 254 Hyperthermus bu...
WP_011007355 169 KSLAELPEVAYLLKNLGVKVWEVFFLIVTGRAKEELDITPEEYEAAVQFLVDVS-TYGfqVRTVEAPFYRRAKLERL--- 244 Pyrobaculum aer...
WP_012186936 162 LNVHELPLIVKVLKDLGVYTWEVFFLIHVGRGIELEALTPEETEDVVNVLYDVS-KYGftVRTVEAPFYRRVVLHRYAFE 240 Caldivirga maqu...
WP_010901054 162 STVHDLPHVLKLIIDKGVKVWEVFFLIKTGRGIDREDLSPEEYENVNKFLLF-AtGYGirIRTVESPIYRRITMQYG--K 238 Thermoplasma ac...
WP_012309417 157 ENVSELPKLAKLLMDVGIRVWELFFLIKVGRGIDLNELTPQECEDVCHFLIEVS-RYGmeVRTVEAPFFRRVAEIRKGFE 235 Candidatus Kora...
WP_011955703 176 ETADDLPSIYALLKTKQVARWSLFFLISVGRGRVLQSLTPAEAEQLMVWIYRIAqEAPfaVATTEAPSYRRVAL------ 249 Roseiflexus sp....
WP_011224832 164 ETVEQLPAIRDLVADLDAVLWSVFFLVPVGRGRVLTPIDPERAERVLKWLHEVSdEASfgLKTTEAPHYRRVAMEQQ--- 240 Haloarcula mari...
WP_011322498 171 TTVETLPAVREFVAEVGAVLWSVFFLVPVGRGQILDPIQPERAESVLEWLQDVSeAAPfgVKTTEAPHYRRVALQRNGSA 250 Natronomonas ph...
WP_010902856 163 DTVEALPAIRDLVAELGVALWSVFFLVPVGRGRALDPVSPARAEEVMAWLDGVArSEAfgVKTTEAPMYRRVRAQRGGD- 241 Halobacterium s...
WP_010866511 244 ------NmgldwrNRL----RPGSLYHKLARKTLELLGDPPGEARAQTT--GTRDGKGVIFVSNKGLVYPSGFLPYPVGD 311 Aeropyrum pernix
WP_011821230 255 lagknpD------EAL----NTGPLYRQLVSRLRQLLGEPQGKPLASTT--GTRDGKGVIFVSYNGTVYPSGFMPYPLGN 322 Hyperthermus bu...
WP_011007355 245 ------K------GRE----FGHPLYNQLVERLRNLMGPPVRAVDPTIV--PTRDGFGIIFIAYDGTVHPSGFLPYPLGN 306 Pyrobaculum aer...
WP_012186936 241 ------N------NEInikpNLGPLYRQLYEGLIKVMGNEPPKLTKRPMvaRTRDGDGIIFVAYNGDVSPSGFLPIKLGN 308 Caldivirga maqu...
WP_010901054 239 ------N------GLI----KGGRLFDELREETVSLIGNPSKEYASSVI--PTRDGFGIIFVGHDGEVYPSGFLPYSVGN 300 Thermoplasma ac...
WP_012309417 236 ------E------ATS----RCGPLYTDLTEHLISLLGPPAGSPNVRSS--FTRDGNGVIFVSHNGEVYPSGFAPLRLGN 297 Candidatus Kora...
WP_011955703 250 ------G------EMR----AAGMSSEQIRQ-----------TPVGRGF--GIRDGNGIVFVSNTGEICPAGFLPLAAGN 300 Roseiflexus sp....
WP_011224832 241 --------------------------------------DEGASGLKRRM--GIRAGKGFAFVSHTGEVFPSGFLPKSAGS 280 Haloarcula mari...
WP_011322498 251 ------T------D------------------------APDADAIGRRG--GIIAGDGFAFVSHTGELFPSGFLPKSAGN 292 Natronomonas ph...
WP_010902856 242 ------------------------------------------GAPQRRA--GVTAGDGFAFVSHTGAVYPSGFLPSSAGN 277 Halobacterium s...
WP_010866511 312 VRKSSLKEIYQSSPELEGLR-KAVFKGRCGRCEFSQLCGGSRARAYSYTGDPLGEDPACAYRP 373 Aeropyrum pernix
WP_011821230 323 IRVKSLVEIYRENLILKRLR-GARFEGRCGRCEFREICGGSRARAYAVTGKPFGEDPACPYRP 384 Hyperthermus butylicus
WP_011007355 307 VRKQSLVKIYREHPLLLKMR-RGEFGGRCGVCEYKDICGGSRARAFAYFKDPLAEDPACVYKP 368 Pyrobaculum aerophilum
WP_012186936 309 VKEESLVKIYRENPVLLRIR-RGEYGGRCGLCEFRFICGGSRARAYAEYGDPLAEDPACVYSP 370 Caldivirga maquilingensis
WP_010901054 301 VKDRSIVDIYRNSDLLNSIRnPDNLHGKCGLCEYRKVCGGSRARAFAYTGDPFGTDPSCIYEP 363 Thermoplasma acidophilum
WP_012309417 298 VREESLVKIYRENEILKKIR-RAEFKGRCGICEYRFICGGSRARAFSRKGDILDEDPCCIYEP 359 Candidatus Korarchaeum cryptofilum
WP_011955703 301 VRTDHIVQVYRESLLFSALHdPSQFGGRCGRCEYRAICGGSRARAFAATGDPLAEDPLCTYQP 363 Roseiflexus sp. RS-1
WP_011224832 281 VREESVVDIYRDSPLFQQLRdDDALTGKCGACRYRTVCGGSRSRAYATTGDPLAADPLCDYRP 343 Haloarcula marismortui
WP_011322498 293 VTDSDLVSLYQDSTLFESLRdRDRLKGKCGACEFRHVCGGSRSRAYAVTGDPLASDPLCAYRP 355 Natronomonas pharaonis
WP_010902856 278 VRERSVVDSYRNSELFQRLRdTEALTGKCGACSFRTVCGGSRSRAYATTGEPMASDPLCPHVP 340 Halobacterium salinarum
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