Conserved Protein Domain Family
ndhF

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CHL00025: ndhF 
NADH dehydrogenase subunit 5
Statistics
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PSSM-Id: 214338
Aligned: 119 rows
Threshold Bit Score: 961.272
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
134093254   1 MEHTYQYLWIISFVTLPVPMLIGMGLLLFPVSTKKLHRIWAFPSVLLLSIVMVFSIDLFIQQINSSSIYQYVWSWTINND 80 
28202219    1 MQLIYQCAWIVPLCPLISSILIGLGLLFFEKSTKSIRRICAISCILSLSVATVICYNLSYEQIIDNSIYQYSWSWISNGD 80 
18860381    1 MEPLYGYAWIIPLCPFGASVLLGLGLFCLPGATGILRRACAIMSTLLLSVSMVISPNLFSQQINGSPTHQSSWSWIPHKN 80 
18860365    1 MEPLYGYAWIIPLCPFGASVLLGLGLFCLPGATGILRRACAIMSTLLLSVSMVISPNLFSQQINGSPTHQSSWSWIPHKN 80 
255961341   1 TKLIYQYARTAPPFPLVSSTLTGLGLFIFPVATNNCRRLYASISTSPSSIAMSIPLHTSWRQLAGDPIHRYPRSWIYNES 80 
124302952   1 MELLYKNIWIVPVCPFVASMSVGLGLFFFPKATKSLRRICAIISIFLLGIAMFISFSIFWQQIRGNPNHQLLWSWFFNKD 80 
49574625    1 MKLSNEYAWIIPLCPLIASCCTGSLSFFFPRVARGFHRLCALLNVFSLAISMFVSLAIFQEQFVKNPIQQYLWIWIPRST 80 
301353341   1 MELSNEYACFIPLCPLVAPRSTGSVSFFFPKATKGFRRLCAAFNIFSLTTAMFISSVLFRQQIANHSIQQYLWARIPRSD 80 
223931112   1 MEFIYQFVWIVPFLPFVASILIGLNLFFFPKSTKSLRHICAIFSILLLSIAMIFSFNILWQQVNNNTIYRYLWSWIFDKQ 80 
242910153   3 AEFSYEYVWIVPSCPLVASGSTGLVSFLLPKATKGLRRSCAAFSILSLTVSMFISFLFFWQQNVSHSTQEYLWSWILKDD 82 
134093254  81 FSLEFGYLIDPLTSILLILITTVGILVLVYSDSYMSHDQGYLRFFVYMSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYL 160
28202219   81 IVLEFGYLIDPLTCIMLVLVTSVAIIVMIYSDGYMSHDEGYVRFFVYLSLFTASMLGLVLSPNLIQIYIFWELVGMCSYL 160
18860381   81 IPLEVGFFIDPLTSIMLILVTTVGVLVMIYSDSYMSHDQGYVRFFVYLSFFTASMLGLVLSSNLVQIYIFRELVGMCSYL 160
18860365   81 IPLEVGFFIDPLTSIMLILVTTVGVLVMIYSDSYMSHDQGYVRFFVYLSFFTASMLGLVLSSNLVQIYIFRELVGMCSYL 160
255961341  81 VASETGYSIDPPTPTTPVLITTAGVMVMIYSDSHMPHDQGYLRFFAYLGLPNAFMLGSVPSPNPMQIHVFRESVGMCPYP 160
124302952  81 ISLQIGFLIDPLTSTMLVSVTSVGILVMIYSDSYMSHDQGYVRFFAYLSLFTASMLGLVLSPNPVQIYIFWELVGMCSYL 160
49574625   81 FCVEIGFLVDSLTLVMSLLVTTVGVLVMIYSDSYMCYDRGYTRFYAYLSLFTASMLGLVLSPNLIQLYVFWELVGMCSYL 160
301353341  81 FCLNVGFLIDPLTLIMSILVTTVGISVMVYSDSYMCHDQGYARFYTYLSLFTASMSGSVFSPNLIQIYVFWELVGMCSYL 160
223931112  81 IHFKIGFLIDPLTSIMLVLITTVGVLVMIYSDSYMSHDQGYVRFFAYLSLFTASMLGLVLSPNLIQIYIFWELVGMCSYL 160
242910153  83 ISLKIGFLVDPLALIMSILVTTVGISVTIYSDSYTCHDQGYARFSAYLSLFTASMLGLVFSPNLIQIYVFWELVGMRSYS 162
134093254 161 LIGFWFTRPIVSNACQKAFVTNRVGDFGLLLGILGLYWITGSFEFQDLFEIFNNLIynNDNEVHFLFVTLCAFLLFSGAI 240
28202219  161 LIGFWFTRPSAANACQKAFITNRIGDFGLLLGILGFYWITGSFEFENLFKGFKDLL--INNEVSPFFAILCASFLFLGPV 238
18860381  161 LIGFWFTRPSAANACQKAFITNRVGDFGLLLGILGIYWITGSFEIHDLSERFDELI--ANNGINLLLANTCAILLFLGPV 238
18860365  161 LIGFWFTRPSAANACQKAFITNRVGDFGLLLGILGIYWITGSFEIHDLSERFDELI--ANNGINLLLANTCAILLFLGPV 238
255961341 161 SIGPRFTRARAAHACQKASITNRVGDFGSLLGVSGFPRATGSFEFESSSVRLEELL--TDRGVSLFPATPCATPLFLGSV 238
124302952 161 LIGFWFSRPSAANACQKAFITNRVGDFGLLLGILGTYWITGSFDIHSLSERFNDLI--DSNGVNLFLANMCALLLFLGPA 238
49574625  161 LVGFWFARSSAANACQKAFVTNRIGDFGLLLGILGIYWTTGSFEISELCDRFAKLK--EIGFSNPILTNIIAFLLLAGPV 238
301353341 161 LIGFWFARSSAANACQKASVTNRIGDFGLLLGILGVYWVTGTFEIFELCDRFAELI--NDGVVNPIFANTIALLLFLGPV 238
223931112 161 LIGFWFTRPSAANACQKAFITNRIGDFGLLLGILGFYWMTGCFEFETLFQRFNELL--VSDKINFYFANLCALLLFLGPI 238
242910153 163 LIGFWFVRPSAANACQKAFVTNRIGDFGLLLGILGIYWITGSFEIYELCDRFIELI--SSGSVNPVLANIIALLLFSGPV 240
134093254 241 AKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFVVIPYIMKLIALIGIITVLLGATLAFAQKDIKRG 320
28202219  239 AKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIYLVARMFPLFETLPFVMSVISWTGAVTALLGATLAFFQKDLKRG 318
18860381  239 AKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMFHFFKALPLTMSFISWIGAITALMGATLALAQKDLKRG 318
18860365  239 AKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMFHFFKALPLTMSFISWIGAITALMGATLALAQKDLKRG 318
255961341 239 AKPAQFPLHVRSPDAMEGPTPIPALIHAATMVAAGIYPVARMFPPSEAPPSMMSSISWVGGLTALLGATIAPAQRDLKRV 318
124302952 239 AKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFFVARMFHFFEALPFTMNIISWVGGITALLGATIALAQKDLKKG 318
49574625  239 AKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFFIARIYGLISTLPLVMQASSWLGGATALLGATLALAQRDLKKG 318
301353341 239 AKSAQFPLHIWLPDATEGPTPISALIHAATMVAAGIFLIARIFNLISMLPPTTYIISWVGGITALLGATLALAQKDLKKG 318
223931112 239 AKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLIARLFPLFQALPYIMNIISWIGAITALLGATIALAQKDLKKG 318
242910153 241 AKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFFIARILNLIEILPLSMSVISWVGGTTALLGATLALTQRDLKKG 320
134093254 321 LAYSTMSQLGYTMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMEVIVGYSPDKSQNMVLMGGLTKHVPITKIAF 400
28202219  319 LAYSTMSQLGYMMLALGIGSYRAGLFHLITHAYSKALLFLGSGSVIHSMEPIVGYRPDESQNMIFMGGLRKHMPITGTTF 398
18860381  319 LAYSTMSQLGYMMLAMGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKCQNMALMGGLRAYMPITGITF 398
18860365  319 LAYSTMSQLGYMMLAMGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKCQNMALMGGLRAYMPITGITF 398
255961341 319 LAYSTMSQPGYMVLAPGVASYRAAIFHLITHAHSKAPSSSGSGSVIHSVEPVTGYCPDRSQNTAFMGGLRTCMPITGTAF 398
124302952 319 LAYSTMSQPGYMMLAPGIGSYRAASFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPEKSQNMSFMGGLRKYMPITGTTF 398
49574625  319 LAYSTMSQLGYMVLALGIGAYQSALFHLVTHAYSKALLFLGAGSVIHSIEKVVGYSPNRSQNMFFMGGLRKYMPITGTTF 398
301353341 319 LAYSTMSQLGYMVSASGIGAYRSALFHLITHAYSKALLFLGSGSVIHSMEKVVGYSPTRSQNMFLMGGLRKCMPITGTTF 398
223931112 319 LAYSTMSQLGYMMLALGIGSYQAALFHLITHAYSKALLFLGSGSVIHSMESIVGYSPNKCQNMAFMGGLRKYMPITGTTF 398
242910153 321 LAYSTMSQLGYMVLALGIGAYRSASSHLITHAYSKASSFLGSGSVIHSMEKVVGYSPIKSQNMLLMGGLRKCMPITGTTS 400
134093254 401 LLGTLSLCGIPPLACFWSKDEILNDSWSYSPIFAIIAFSTAGLTAFYMFRVYLLTFEGHLNIYFQNYSG-KKNSAFY--S 477
28202219  399 LLGTLSLCGIPPFACFWSKDEIIADSWLYSPFIGWIALLTAGLTSFYMFRIYFLTFEGEFRANSF-----KENTPVS--S 471
18860381  399 LFGTLSLCGIPPFACFWSKDKILADSWSYSPILGGIAWFTAGLTAFYMSRIYLLTFEGDFRAN-------ASIGTVT--D 469
18860365  399 LFGTLSLCGIPPFACFWSKDKILADSWSYSPILGGIAWFTAGLTAFYMSRIYLLTFEGDFRAN-------ASIGTVT--D 469
255961341 399 LSGTPPPRGIPPFARFRSKDEIPNDGWLSRPILGWMAWCTAGPTGSHMLRTYLPTFEGYYRANAFGPPRp---------P 469
124302952 399 LLGTLSLCGIPPFACFWSKDEILVDSWIASASLGWIAWCTAGLTGFYMFRMYFVTFEGDFRGNL---SYkDTDKSVS--Y 473
49574625  399 LLGTLSLSGIPPLACFWSKDEIIHESWLSSLPLGILASGTAGLTAFYMFRIYLLTFEGDFCTIKTDWVDfNHFAPL---S 475
301353341 399 LSGTLSLCGIPPLACFWSKDEIIAESWLSSLPLGLLASTTAGLTAFYTFRIYLLTFEGDFRANQINDTG-FNNSPLStnL 477
223931112 399 LLGTLSLCGIPPFACFWSKDEIITDSWLYFSSLGLISWITAGLTAFYMFRIYFLTFEGHLRA--------KSDNVFFiyP 470
242910153 401 FLGTLSLCGIPPLACFWSKDEITAESWLYSSYLGWIASITAGFTASYMFRIYLLTFEGDFRANNISHSH-FGISRLSdnN 479
134093254 478 ISLWGKQG------------------------SKILKKkm--rLLPLLTINNKNNNerasffCFFWKKIY--QTGGTVRK 529
28202219  472 VSLWGEFR------------------------FEEFGEkkadsVLQIVEKSSPK--------EFFR------FVQSNRES 513
18860381  470 APLPSRHS------------------------------------LYVGNLTKDSGNvihtvpQFVQDEAVpnKSFGNVRN 513
18860365  470 APLPSRHS------------------------------------LYVGNLTKDSGNvihtvpQFVQDEAVpnKSFGNVRN 513
255961341 470 ASVWEDRR------------------------YRASGRgagfaAGLLPTGCSDTTA------AKLPVDRSggTRSGDSRR 519
124302952 474 KSIWGNLQtlserdkvfsnnsytsfsdptgdfYEIPENvfslpERRIKNKSLNIEKsfnvlsDFKGSDNRneISEDAFVS 553
49574625  476 ISMWGETEg----------------------------------NLSLNQINQNVAS-------------VrlGITKNKGF 508
301353341 478 INSWGGAQ------------------------SGLPTKqtdtsSVSIQYIEQNEIL----------------ETNSFLDP 517
223931112 471 VSIWGNLK------------------------SNNFKL------------------------EFVSKEKNf-ILNKSDLN 501
242910153 480 ISLWGETK----------------------------KElsiekNIDNPLSSQNAELpeavpvAYSYKKNLthEKGIQTDS 531
134093254 530 MTCPFITINHf---gTKRIFSY---PQESDNTILFPMLVLVLFTLFIGAIGI-PfnqFN----QEEM--NFDILSKLLIP 596
28202219  514 SETQIGNYLSaypskEPIHFLY---PKESDYTMLIPLLILSIPTLLIGFIGA-P---LP----NGQL--GSDLLSHWL-- 578
18860381  514 PSSSs---------pPKRNLRF---PEESDFLMILPLVLLAIPTLFIGSLGA-P---FL----REGF--SSNLPFNWLDP 571
18860365  514 PSSSs---------pPKRNLRF---PEESDFLMILPLVLLAIPTLFIGSLGA-P---FL----REGF--SSNLPFNWLDP 571
255961341 520 GWGSTVTHYS-----AVEHYKPllcPKESDDAMLFPLVVPTIPTFPVGSIGVqSpigLGtgfiDPQPdcWLDLLLNYPR- 593
124302952 554 --INREIRNE--------NILY---PNESDNSMLFSLISLAIPTLFIGFIGV-P---FS----HKGI--NSDLLSDLLAP 610
49574625  509 SSSYLANPNGitnvhYDQSLPK---PKESSSAMTFSLVMLAIPTTLVGLLGI-N---LI----GETA--NFELSPEWLIN 575
301353341 518 KSKGVIQAHS------DPKLLH---PKESDLAMALPLTVLAIPTVLVGFIGV-D---LT----QKET--GLDLLSEWLTP 578
223931112 502 INKNNNKNENffffsGATKAVF---PKESENKMLFSLLVLTLPTLFIGFLGA-P---FP----DGQI--GSDLLSHWLYP 568
242910153 532 DLSHSHNLLN---------------PEESDFSMVLPLIVLVMPTLLAGLIGV-N---FI----QKET--GLDSLSEWLIP 586
134093254 597 SLSLLHQNQNKSV--DWYEFVTNSTFSVSIASFGIFIASSLYKPI-YSSLQNLKFLNLV---AKKgpkriLRDKIINVIY 670
28202219  579 --NSFGNLSPERLseNWLEFIEDAITSISIASFGIFSAFILYGPA---SIFPRDLEKKIepqLKG-----VWGFFINYMY 648
18860381  572 --ILVYSIKTNSE--DWLDLVLDSVPSIAVASLGILISLTLYGPT---SSLPRDLREGIdpeATG-----TLGSLLDSIY 639
18860365  572 --ILVYSIKTNSE--DWLDLVLDSVPSIAVASLGILISLTLYGPT---SSLPRDLREGIdpeATG-----TLGSLLDSIY 639
255961341 594 --GIIQQ--------DWSELLPDATTSVATALSGILVASILHGRR---PILQPPRIDPE---LEG-----ISGYFPSYLY 652
124302952 611 LTDSFHKDNSE----NLVDFFLKSIPSVSIALVGVSISFFIYGPV---S--SRDLRKEIdpkTKD-----FLGYFFNSLS 676
49574625  576 PVHFFELSKSFNI---YIKILLNSRSSLILSFFGIFFSFIIYKKS-YKYFYITKKLVGF---TK------LVSKFGLLVQ 642
301353341 579 F-TSFSEANKDFG--NLMEILMNSTGSLSFSFVGILISFTIYGKV--EKLVDIKIFDKLkltNRN-----FLTTFGHFVR 648
223931112 569 MF----KNSNEIItgNWFEFGLNSINSLSIVFSGIFIAFILYGPV---SFFSQNFEKNFefsLKK-----NLNPFFSFIY 636
242910153 587 LIVPIKSNKANLI-----ELLIDSIGSVSLSFVGIFISYVMYGPIsFYQIKIYKYIRDIkvlDEK-----LLSSFGHFIQ 656
134093254 671 DWSYNRGYIDVFYAISLTEGIRRLAELTSFFDRRVIDGITNGVGFTSFFAGEGIKYVGGGRISFYLLLYLFYVLIFLLIS 750
28202219  649 NWSQYRGYIDQYYNKIFVEGTRILAYASSFFDRWIIDGIVNGTGISSFSGGEGMRYGEGGRVSSYLFGLVFGMTILLAVI 728
18860381  640 NWSYYRGYIDGLYNLTFVRGMRTLAKTIYSFDRWIVDGIVNGIGISGLFGGVGMRY-GGGRVSSHLIGLITGLVSLLILL 718
18860365  640 NWSYYRGYIDGLYNLTFVRGMRTLAKTIYSFDRWIVDGIVNGIGISGLFGGVGMRY-GGGRVSSHLIGLITGLVSLLILL 718
255961341 653 DWSYYRGYVDRYYNIVPVASVRILAKKAPTPDDWVIDGIVNGVGISGTFGGEALRYAGGGRISHHSPGPILGTPIPLTIV 732
124302952 677 NWSYYRGYIDNLYNVIFIEGTRILSKSICFFDQWIIDGIVNGIGILSFFGGEGMRYGEGGRIPSYLFGLIIGNILMLIIL 756
49574625  643 SWSLNRGYIDYYYDICFVRNLRSLSKSLSDFDRYGIDGFVNVIGALNFFGGEFIRYGENGRISYYLFIIIFGAILSSVLI 722
301353341 649 DWSVNRGYIDYYHNIYFVQGLISISKLVLLLDQYVIDGFVNGTGVLNLLGGEGIRYGENGRISYYLFGLIFGLISLLLLA 728
223931112 637 NWSYFRGYIDGYYEIIFVKGIRSLSQFILLFDEWLIDGIINGFGMLTSFGGEGTKYLEGGRISSYLFGLIFGIILLLLLF 716
242910153 657 GWSLNRGYIDYYYNVYLIKTTVFLSKLVVFFDQWVIDGIINGTGASSLFGGEGARYGGSGRISYYSFGLITGIIPLILLA 736
134093254 751 SSIFSS 756
28202219  729 LLII-- 732
18860381  719 IRNAGF 724
18860365  719 IRNAGF 724
255961341 733 TTGYEH 738
124302952 757 IIKNDI 762
49574625  723 FIFLPF 728
301353341 729 IPPLP- 733
223931112 717 FFN--- 719
242910153 737 VFVLPI 742
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