1JR3


Conserved Protein Domain Family
holA

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TIGR01128: holA 
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DNA polymerase III, delta subunit
DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273455
Aligned: 32 rows
Threshold Bit Score: 200.949
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1JR3_D          32 QESQDAVRQVAAAQGFEEHHTFSIDPN-TDWNA--IFSLCQAMSLFASRQTLLLLLPENGPnaAI-------NE------ 95  Escherichia coli
AAR35583        30 ERAVKRLTERVVSADFRDFNLDVFYGNeSKGDD--IATAAQTLPMFADRRMVLVKRAGDLS--AAa------LE------ 93  Geobacter sul...
CAE79350        33 NQSVERFKYAVLTEGAVDFNYSLFYASdADVVS--VRDAVETLPMMAQRRLVILKEAQELT--DKe------WA------ 96  Bdellovibrio ...
AAM24198        30 LDAVKRLKARLLVPEFEDMNYIVIEREnPEEYVeaIIENCETLPFFSNYKIVVVKNEEEQLskIGdk----eLK------ 99  Caldanaerobac...
tigr:GBAA_4548  28 NETIKLITTEALEEEDREFNVVTYDLEeAYLED--VVEDARTLPFFGERKVLLIKSPLFLTsqKEkle--qnIK------ 97  Bacillus anth...
CAD64489        33 DQLKQAFTQQIPSEEQT-MNVGSYDMEtTPVAV--ALDDAMSAPFFGERRLVFINHPYFLTgeNKktkvdhdLA------ 103 Lactobacillus...
BAC13933        29 EELKQALIKQVLNGDTS--NLSLYDLNeMPIQE--VLTDAETFPFFEEKKLIIATNASFLKarPDklsfehnTS------ 98  Oceanobacillu...
AAF98346        30 SQLKSRLMEQIAFDKDD-LAYSYFDMSeAAYQD--AEMDLVSLPFFAEQKVVIFDHLLDITtnKKsflkekdLK------ 100 Streptococcus...
WP_001282570    17 EKQSAEIISQFLKSDRDDFNFVKYNLYeTEIAP--IVEETLTLPFFSDKKAILVKNAYIFTgeKS-------PKdmahnv 87  Staphylococcu...
WP_000879642    30 EVMKSQMLKQIGYDSAD-LNFAYFDMKeVVYKD--VELELVSLPFFADEKIVILDYFMDITtaKKrfltddeLK------ 100 Streptococcus...
1JR3_D          96 -QLLTLTGL--LHDDLLLIVRG--N--KLSKAQENAAWFTalaNrSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQ 168 Escherichia coli
AAR35583        94 -TLAACVAD--PAPQTCLLFVG--D--KIDKRKKFFLDLAk--K-GELVEFKRPYENQLGVFIRDEARSLGKRIDGAAVE 163 Geobacter sul...
CAE79350        97 -ELEPLLES--PVDSTVFVILA--S--RVDKRKKQIRLLLd--K-ADCVEFKKPYENQIPSWINYIAQSLGLTISNDAIL 166 Bdellovibrio ...
AAM24198       100 -RLTDYFKNrvLGNTSLVVVVV--SgeKIDSRKKLYKFMEk--E-AAVVEFKKLTPEEAVNYAGYFLKKHGKKAAKKDVE 173 Caldanaerobac...
tigr:GBAA_4548  98 -ILEEYIGE--PSPFSILVFVA--PyeKLDERKKITKLLKk--T-ADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVS 169 Bacillus anth...
CAD64489       104 -SLQHYFEQ--PEPSTILVFMA--PyeKLDARKKLVKTLKk--Q-ATTVEVNQVSEAETQRYVQAALDEKQIRIDADALQ 175 Lactobacillus...
BAC13933        99 -YLEEYVQN--PPDYTVLLIIA--PyeKLDERKKITKQLKn--N-SQLVDCQEIREQDARKWLESIISKNNITMDAKAKD 170 Oceanobacillu...
AAF98346       101 -AFEAYLEN--PLETTRLIIFA--Pg-KLDSKRRLVKLLKr--D-ALVLEANPLKEAELRTYFQKYSHQLGLGFESGAFD 171 Streptococcus...
WP_001282570    88 dQLIEFIEK--YDGENLIVFEIyqN--KLDERKKLTKTlk--kH-ARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALD 160 Staphylococcu...
WP_000879642   101 -SFEEYLDN--PSPTTKLIIFAe-G--KLDSKRRLVKLLKr--D-AKAFDAVEVKEQELRQYFQKWSQKQGLQFTNHSFE 171 Streptococcus...
1JR3_D         169 VLCYCYEGNLLALAQALERLSLLWPDG-K-LTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVIL 246 Escherichia coli
AAR35583       164 MLVYLVGNNLGELATQLEKVATFVGTR-EtLTVEDVREVVSDTKVESVFDLANALGERDLGKSLRSLATILRDGEAPLML 242 Geobacter sul...
CAE79350       167 LLHKLVGHHLTEIEGELKKLGEFVGER-R-IEVADVAQAVSRSKEENVFDFTKAIGENDRVKALELLVHLLDQGQNEIGI 244 Bdellovibrio ...
AAM24198       174 SLVKNIGTDLYSIVNELEKVIAYSEGE-T-LDLEEAREVLSVTLQQNVFHLVNAIGMKKEKEAYRALYALLSKGEVPLII 251 Caldanaerobac...
tigr:GBAA_4548 170 LLLELVGSNVTMLAKEMDKLTLYVGMG-GeITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQEEPIKL 248 Bacillus anth...
CAD64489       176 ELVNRTDGQLGLIMGQLPKLMIYAAQS-QrIDLAAVQALVTKSLTQNVFDLVNDVLRYQTQSAVELYHELVAAQEAPLKI 254 Lactobacillus...
BAC13933       171 MLEAEVTTNIQLLQSEIEKMALYVGEG-GhVSEEDAQRLISHTPTSTSLAMVDAVMHGEIQRAMRIYKDLEKMNEDPIAM 249 Oceanobacillu...
AAF98346       172 QLLLKSNDDFSQIMKNMAFLKAYKKTGn--ISLTDIEQAIPKSLQDNIFDLTRLVLGGKIDAARDLIHDLRLSGEDDIKL 249 Streptococcus...
WP_001282570   161 LFIELTGINFNIVSQEIEKLILFLGDRpT-INKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKL 239 Staphylococcu...
WP_000879642   172 NLLIKSGFQFSEIQKNLLFLQSYKANS-V-IEEEDIVNAIPKTLQDNIFDLTQFILTKKMDQARDLVRDLTLQGEDEIKL 249 Streptococcus...
1JR3_D         247 LRTLQRELLLLVNLKRQSAH-TPLRALFDKHR------VWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQ-DYGQ 318 Escherichia coli
AAR35583       243 LAMIARHFRQLWRVRELMAAkVQQQEVARRTG------INPYFLKGVMDQARNFTVADLRRVFEGLYAADLALKGvGGGG 316 Geobacter sul...
CAE79350       245 VSLVARHVRILLTLKRGMEEgLHGAKLAHFAQ------VPPYFLESYLDQARLWTAKKLEQTLVVLSETDKALK--SSPL 316 Bdellovibrio ...
AAM24198       252 LTMIARQIRLIAKLKSLEGKaFdKKSIASYLG------IPFFAVDDIVRQSKLFTREDLYKAYKECLRCDIALK---SGT 322 Caldanaerobac...
tigr:GBAA_4548 249 LALLVSQFRLLHQVKELQQRgYGQNQIASHIG------VHPYRVKLAMNQTKFFSFEELKKVIIELAEADYSMK--TGKM 320 Bacillus anth...
CAD64489       255 NAILLGQFRLLLQVKIMARAgYSQGSLASTLk------VHPYRVKLAMQTVRHFDQAALRAAYLGLLQTEVQMK--TTQR 326 Lactobacillus...
BAC13933       250 IGLLSYQFRMILRVKLMKQKgYTQFQMQKQIG------AHPYVIKIAMSREKNISQDKLEQIIQRLAETDSVMK--QGKM 321 Oceanobacillu...
AAF98346       250 IAIMLGQFRLFLQLTILARDvKNEQQLVISLSdilgrrVNPYQVKYALKDSRTLSLAFLTGAVKTLIETDYQIK--TGLY 327 Streptococcus...
WP_001282570   240 LALITSNYRLFYQCKILSQKgYSGQQIAKTIG------VHPYRVKLALGQVRHYQLDELLNIIDACAETDYKLKS-SY-M 311 Staphylococcu...
WP_000879642   250 IAVMLGQFRTFTQVKILAESgQTESQIASSLGsylgrnPNPYQIKFALRDSRGLSLSFLKQAISYLIETDYQIK--TGLY 327 Streptococcus...
1JR3_D         319 SVWAELEGLSLLLC 332 Escherichia coli
AAR35583       317 KPSLVMERLVMDVC 330 Geobacter sulfurreducens PCA
CAE79350       317 SSHIWLENLVLKTC 330 Bdellovibrio bacteriovorus HD100
AAM24198       323 EPSFALENLIKKLC 336 Caldanaerobacter subterraneus subsp. tengcongensis MB4
tigr:GBAA_4548 321 DKKLVLEFFLMRLN 334 Bacillus anthracis str. 'Ames Ancestor'
CAD64489       327 DPELLFELFMVQFV 340 Lactobacillus plantarum WCFS1
BAC13933       322 EKSLAFELLLMELI 335 Oceanobacillus iheyensis HTE831
AAF98346       328 EKSYLVDIALLKIM 341 Streptococcus pyogenes
WP_001282570   312 DKQLILELFILSL- 324 Staphylococcus aureus
WP_000879642   328 EKGFLFEKALLQIA 341 Streptococcus pneumoniae
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