Molecular Pathogenesis
One family with tetra-amelia syndrome with a pathogenic variant in WNT3 has been identified. However, genetic heterogeneity of tetra-amelia syndrome is suggested by Krahn et al [2005] and Sousa et al [2008]. Krahn et al [2005] described two sibs, born to a consanguineous family, with tetra-amelia and bilateral lung agenesis. Sousa et al [2008] reported a fetus with tetra-amelia, cleft lip/palate, bilateral lung agenesis with bilateral pulmonary artery agenesis and a small right heart. No pathogenic variant was identified by molecular analysis of the coding regions of WNT3 and of candidate genes HS6ST1, HS6ST3.
Gene structure.
WNT3 comprises five exons spanning 54.2 kb of genomic sequence; it encodes a transcript of 1506 nt (NM_030753.3). The 1068-nt open reading frame starts in exon 1 and terminates with a TAG stop codon in exon 4, encoding a protein of 355 amino acids. For a detailed summary of gene and protein information, see Table A, Gene.
Pathogenic variants. The NM_030753.3:c.247C>T (p.Gln83Ter) substitution, identified in a single family with tetra-amelia syndrome, is the only causative variant reported to date. The nonsense variant at codon 83 creates a premature stop codon. The mutated transcript, unless rapidly degraded by nonsense-mediated RNA decay, is likely to result in a truncated protein of only 82 amino acids (including the signal peptide of 21 amino acids) instead of 355 amino acids of the mature peptide.
Normal gene product. Proto-oncogene Wnt-3 (WNT3) is one of 19 members of the human WNT superfamily of highly conserved secreted signaling molecules that play key roles in embryonic development [Wodarz & Nusse 1998, Moon et al 2004]. Work in animal models supports the role of WNT3 signaling in the initiation of the formation of the apical ectodermal ridge, a transient structure in the embryonic limb bud critical for limb outgrowth.
WNTs act as ligands for the frizzled family of transmembrane receptors. Intracellularly, WNT signals can be transduced through a β-catenin-dependent (= canonic) and a β-catenin-independent (non-canonic) WNT signaling. In the WNT/β-catenin pathway, absence of WNT ligand leads to degradation of β-catenin by the proteasome. Conversely, upon binding of WNT ligand to frizzled, degradation of β-catenin is decreased and it accumulates in the nucleus where it can activate transcription.
Abnormal gene product. The p.Gln83Ter variant leads either to rapid degradation by RNA surveillance mechanisms or to truncation of WNT3 at its amino terminus and is, in either case, likely to result in a null allele for WNT3. Loss of function of WNT3 in tetra-amelia syndrome supports the role of WNT3 as a limb-inducing gene in humans.