Molecular Pathogenesis
DCX shares homology with a group of genes that have a conserved doublecortin (DC) domain comprising two tandemly repeated 80-amino acid regions (pep1 and pep2) [Sapir et al 2000, Taylor et al 2000]. This gene family comprises eleven paralogs in human and in mouse and includes genes such as RP1 (OMIM 603937), associated with a form of retinitis pigmentosa, and DCDC2 (OMIM 605755), associated with dyslexia [Reiner et al 2006].
Gene structure.
DCX spans 118 kb of genomic DNA and comprises nine exons including the coding exons 2-7; alternatively spliced exons 1a, 1b, and 1c are untranslated [des Portes et al 1998]. DCX transcripts include:
NM_178153.2; DCX-203 (
ENST00000371993.6) – the main isoform; comprising 7 exons including the untranslated exon 1b;
NM_001195553 – alternative transcript with 18-bp (6-amino acid) insertion between exons 5 and 6 and 3-bp (1-amino acid) insertion between exons 6 and 7 [
Gleeson et al 1998].
For a detailed summary of gene and protein information, see Table A, Gene.
Pathogenic variants. Disease-causing alleles include missense (~80%) and nonsense variants, frameshifts, intragenic and gene deletions, and small deletions or insertions. The majority of missense variants occur in the two evolutionary conserved domains, the N-terminal N-DC and C-terminal C-DC domains [Gleeson et al 1999, Sapir et al 2000, Leger et al 2008].
Hot spot variants, observed multiple times, account for more than one third of identified sequence variants: p.Arg39Ter, p.Arg303Ter, p.Arg78Cys, p.Arg78His, p.Arg78Leu, p.Arg192Trp, p.Arg186Cys, p.Arg186His, p.Arg186Leu [Bahi-Buisson et al 2013].
To date, males with lissencephaly resulting from a constitutional hemizygous DCX whole-gene deletion or hemizygous nonsense variant appear to be extremely rare, suggesting that DCX loss-of-function variants are likely lethal [Haverfield et al 2009, Leger et al 2008].
Somatic mosaicism is a frequent finding in DCX-related SBH. The detection rate for mosaicism depends on the sensitivity of the testing method used and will further increase with widespread use of next-generation sequencing methodology [Jamuar et al 2014]. Due to the sensitivity of current technologies, the proportion of somatic mosaicism in both affected individuals and parents for deletions or duplications may be underestimated.
In females with two X chromosomes, DCX pathogenic variants may not result in characteristic clinical features. To the authors' knowledge, sex-chromosome aneuploidies (e.g., 45,X or 47,XXX or 47,XXY) have not to date been associated with DCX-related disorders.
Table 3.
DCX Pathogenic Variants Discussed in This GeneReview
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DNA Nucleotide Change | Predicted Protein Change | Reference Sequences |
---|
c.115C>T | p.Arg39Ter |
NM_178153.2
NP_835366.1
|
c.232C>T | p.Arg78Cys |
c.233G>A | p.Arg78His |
c.233G>T | p.Arg78Leu |
c.556C>T | p.Arg186Cys |
c.557G>A | p.Arg186His |
c.557G>T | p.Arg186Leu |
c.574C>T | p.Arg192Trp |
c.907C>T | p.Arg303Ter |
Variants listed in the table have been provided by the authors. GeneReviews staff have not independently verified the classification of variants.
GeneReviews follows the standard naming conventions of the Human Genome Variation Society (varnomen.hgvs.org). See Quick Reference for an explanation of nomenclature.
Normal gene product. Neuronal migration protein doublecortin (DCX) is a microtubule-binding protein containing two in-tandem-organized microtubule-binding domains, in the so-called DCX domain, not previously described in other microtubule-associated proteins (MAPs). Microtubules constitute a central element of the cytoskeleton and as such play a crucial role in many cellular processes such as cell division, cell migration, and maintenance of cellular morphology. In vitro, DCX can promote microtubule polymerization and stabilization of the microtubules.
DCX associates with the 13-protofilaments microtubules to stabilize them and can even override the nucleotide dependence of microtubule polymerization [Moores et al 2006, Fourniol et al 2010]. DCX is particularly enriched at the end neuronal processes where microtubules enter the growth cone [Friocourt et al 2003]. DCX also appears to be enriched in axonal regions capable of generating collaterals [Tint et al 2009]. Therefore, DCX is thought to promote elongation and stabilization of the microtubule network during process outgrowth. Moreover, DCX could also be involved in the somal translocation occurring during neuroblast migration and influence the course of neuroblast proliferation.
DCX is a phosphoprotein that can be a substrate for several protein kinases including JNK, PKA, MARK, and Cdk5. Phosphorylation of DCX alters its interaction with microtubules and thereby possibly its function. The impact of DCX phosphorylation on its reported interaction with other proteins, such as LIS1, neurabin II, or clathrin-associated protein µ1A, remains to be investigated.
More recently, DCX has also been shown to be expressed during embryonal development in motor neurons and skeletal muscle at the neuromuscular junctions with loss of DCX resulting in disturbed neuromuscular junction formation [Bourgeois et al 2015].
Abnormal gene product. Abnormal DCX products may affect proper microtubule formation and perturb the mitotic machinery, although not all abnormal products appear to do so to the same extent [Sapir et al 2000, Couillard-Despres et al 2004]. The effect of DCX pathogenic variants on protein function is therefore not yet fully understood. Functional studies indicate loss of function for several abnormal DCX products, which may however be mediated by different cellular or off-pathway mechanisms [Yap et al 2016].