Metagenome-assembled genome: iMGMC-28_1678881632

Identifiers: BioSample: SAMEA112815533; SRA: ERS14823075

Organism: Clostridium perfringens SM101
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; Clostridium perfringens

Attributes

broad-scale environmental context	mouse digestive system
collection date	not provided
environmental medium	feces
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	This sample represents a Metagenome-assembled genome assembled from runs of multiple projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).
sample name	iMGMC-28_1678881632
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-21
ENA-LAST-UPDATE	2023-03-21
External Id	SAMEA112815533
INSDC center alias	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-21T12:27:26Z
INSDC last update	2023-03-21T12:27:26Z
INSDC status	public
Submitter Id	iMGMC-28_1678881632
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	default
binning software	metabat2
completeness score	98.39
completeness software	CheckM
contamination score	3.94
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	ERS606288,ERS606289,ERS606290,ERS606291,ERS606292,ERS606293,ERS606294,ERS606295,ERS606296,ERS606297,ERS606298,ERS606299,ERS606300,ERS606301,ERS606302,ERS606303,ERS606304,ERS606305,ERS606306,ERS606307,ERS606308,ERS606309,ERS606310,ERS606311,ERS606312,ERS606313,ERS606314,ERS606315,ERS606316,ERS606317,ERS606318,ERS606319,ERS606320,ERS606321,ERS606322,ERS606323,ERS606324,ERS606325,ERS606326,ERS606327,ERS606328,ERS606329,ERS606330,ERS606331,ERS606332,ERS606333,ERS606334,ERS606335,ERS606336,ERS606337,ERS606338,ERS606339,ERS606340,ERS606341,ERS606342,ERS606343,ERS606344,ERS606345,ERS606346,ERS606347,ERS606348,ERS606349,ERS606350,ERS606351,ERS606352,ERS606353,ERS606354,ERS606355,ERS606356,ERS606357,ERS606358,ERS606359,ERS606360,ERS606361,ERS606362,ERS606363,ERS606364,ERS606365,ERS606366,ERS606367,ERS606368,ERS606369,ERS606370,ERS606371,ERS606372,ERS606373,ERS606374,ERS606375,ERS606376,ERS606377,ERS606378,ERS606379,ERS606380,ERS606381,ERS606382,ERS606383,ERS606384,ERS606385,ERS606386,ERS606387,ERS606388,ERS606389,ERS606390,ERS606391,ERS606392,ERS606393,ERS606394,ERS606395,ERS606396,ERS606397,ERS606398,ERS606399,ERS606400,ERS606400,ERS606401,ERS606401,ERS606402,ERS606402,ERS606403,ERS606403,ERS606404,ERS606405,ERS606406,ERS606406,ERS606407,ERS606408,ERS606409,ERS606409,ERS606410,ERS606411,ERS606412,ERS606413,ERS606414,ERS606415,ERS606416,ERS606417,ERS606418,ERS606419,ERS606420,ERS606421,ERS606422,ERS606423,ERS606424,ERS606425,ERS606426,ERS606427,ERS606428,ERS606429,ERS606430,ERS606431,ERS606432,ERS606433,ERS606434,ERS606435,ERS606436,ERS606437,ERS606438,ERS606439,ERS606440,ERS606441,ERS606442,ERS606443,ERS606444,ERS606445,ERS606446,ERS606447,ERS606448,ERS606449,ERS606450,ERS606451,ERS606452,ERS606453,ERS606454,ERS606455,ERS606456,ERS606457,ERS606458,ERS606459,ERS606460,ERS606461,ERS606462,ERS606463,ERS606464,ERS606465,ERS606466,ERS606467,ERS606468,ERS606469,ERS606470,ERS606471,ERS606288,ERS606289,ERS606290,ERS606291,ERS606292,ERS606293,ERS606294,ERS606295,ERS606296,ERS606297,ERS606298,ERS606299,ERS606300,ERS606301,ERS606302,ERS606303,ERS606304,ERS606305,ERS606306,ERS606307,ERS606308,ERS606309,ERS606310,ERS606311,ERS606312,ERS606313,ERS606314,ERS606315,ERS606316,ERS606317,ERS606318,ERS606319,ERS606320,ERS606321,ERS606322,ERS606323,ERS606324,ERS606325,ERS606326,ERS606327,ERS606328,ERS606329,ERS606330,ERS606331,ERS606332,ERS606333,ERS606334,ERS606335,ERS606336,ERS606337,ERS606338,ERS606339,ERS606340,ERS606341,ERS606342,ERS606343,ERS606344,ERS606345,ERS606346,ERS606347,ERS606348,ERS606349,ERS606350,ERS606351,ERS606352,ERS606353,ERS606354,ERS606355,ERS606356,ERS606357,ERS606358,ERS606359,ERS606360,ERS606361,ERS606362,ERS606363,ERS606364,ERS606365,ERS606366,ERS606367,ERS606368,ERS606369,ERS606370,ERS606371,ERS606372,ERS606373,ERS606374,ERS606375,ERS606376,ERS606377,ERS606378,ERS606379,ERS606380,ERS606381,ERS606382,ERS606383,ERS606384,ERS606385,ERS606386,ERS606387,ERS606388,ERS606389,ERS606390,ERS606391,ERS606392,ERS606393,ERS606394,ERS606395,ERS606396,ERS606397,ERS606398,ERS606399,ERS606400,ERS606400,ERS606401,ERS606401,ERS606402,ERS606402,ERS606403,ERS606403,ERS606404,ERS606405,ERS606406,ERS606406,ERS606407,ERS606408,ERS606409,ERS606409,ERS606410,ERS606411,ERS606412,ERS606413,ERS606414,ERS606415,ERS606416,ERS606417,ERS606418,ERS606419,ERS606420,ERS606421,ERS606422,ERS606423,ERS606424,ERS606425,ERS606426,ERS606427,ERS606428,ERS606429,ERS606430,ERS606431,ERS606432,ERS606433,ERS606434,ERS606435,ERS606436,ERS606437,ERS606438,ERS606439,ERS606440,ERS606441,ERS606442,ERS606443,ERS606444,ERS606445,ERS606446,ERS606447,ERS606448,ERS606449,ERS606450,ERS606451,ERS606452,ERS606453,ERS606454,ERS606455,ERS606456,ERS606457,ERS606458,ERS606459,ERS606460,ERS606461,ERS606462,ERS606463,ERS606464,ERS606465,ERS606466,ERS606467,ERS606468,ERS606469,ERS606470,ERS606471,ERS3493779,ERS3493780,ERS3493781,ERS3493782,ERS3493783,ERS3493784,ERS3493785,ERS3493786,ERS3493787,ERS3493788,ERS3493789,ERS3493790,ERS3493791,ERS3493792,ERS3493793,ERS3493794,ERS3493795,ERS3493796,ERS3493797,ERS3493798,ERS3493799,ERS3493800,ERS3493801,ERS3493802,ERS3493803,ERS3493804,ERS3493805,ERS3493806,ERS3493807,ERS3493808,ERS3493809,ERS3493810,ERS3493811,ERS3493812,ERS3493813,ERS3493814,ERS3493815,ERS3493816,ERS3493817,ERS3493818,ERS3493819,ERS3493820,ERS3493821,ERS3493822,ERS3493823,ERS3493824,ERS3493825,ERS3493826,ERS3493827,ERS3493828,ERS3493829,ERS3493830,ERS3493831,ERS3493832,ERS3493833,ERS3493834,ERS3493835,ERS3493836,ERS3493837,ERS3493838,ERS3493839,ERS3493840,ERS3493841,ERS3493842,ERS3493843,ERS3493844,ERS3493845,ERS3493846,ERS3493847,ERS3493848,ERS3493849,ERS3493850,ERS3493851,ERS3493852,ERS3493853,ERS3494289,ERS3494290,ERS3494291,ERS3494292,ERS3494293,ERS3494294,ERS3494295,ERS3494296,ERS3494297,ERS3494298,ERS3494299,ERS3494300,ERS3494301,ERS3494302,ERS3494303,ERS3494304,ERS3494305,ERS3494306,ERS3494307,ERS3494308,ERS3494309,ERS3494310,ERS3494311,ERS3494312,ERS3494313,ERS3494314,ERS3494315,ERS3494316,ERS3494317,ERS3494318,ERS823133,ERS823134,ERS823135
scientific_name	Clostridium perfringens SM101
sequencing method	Illumina HiSeq 2000, Illumina MiSeq, Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This is a Metagenome-assembled genome derived from the primary whole genome shotgun (WGS) of multiple metagenomic data sets ERP008710,ERP011836,ERP115625. This sample represents a Metagenome-assembled genome from the runs of the following projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project

Submission: EBI; 2023-03-22

Accession:: SAMEA112815533
ID:: 33856934

BioProject Nucleotide

BioSample

National Center for Biotechnology Information

Result Filters

Send to:

Links from Nucleotide

Metagenome-assembled genome: iMGMC-28_1678881632

Supplemental Content

Related information

Recent activity