Candidatus Kentron sp. SD genome

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Result Filters

Organism: Candidatus Kentron sp. SD
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Gammaproteobacteria incertae sedis; Candidatus Kentron; unclassified Candidatus Kentron

Attributes

collection date	2013-07-02
broad-scale environmental context	marine neritic benthic zone biome
local-scale environmental context	bay
environmental medium	shallow marine sediment
geographic location	Italy
investigation type	metagenome-assembled genome
isolation source	Kentrophoros sp. SD
project name	Metagenomics of Kentrophoros ciliate-bacteria symbiosis
sample name	BECK_S1320
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2019-02-10T17:31:59Z
ENA-LAST-UPDATE	2019-02-07T10:27:28Z
External Id	SAMEA5328725
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC first public	2019-02-10T17:31:59Z
INSDC last update	2019-02-07T10:27:28Z
INSDC status	public
Submitter Id	BECK_S1320
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	SPAdes 3.5.0
binning parameters	kmer+coverage
binning software	combination
completeness score	92
completeness software	checkm
contamination score	1.87
geographic location (latitude)	42.7313
geographic location (longitude)	10.1534
metagenomic source	1969832
sample derived from	ERS2281217
scientific_name	Candidatus Kentron sp. SD
sequencing method	Illumina
taxonomic identity marker	16S gene